Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3609 and Shewana3_3610 are separated by 8 nucleotides Shewana3_3610 and Shewana3_3611 are separated by 216 nucleotides
Shewana3_3609: Shewana3_3609 - secretion protein HlyD family protein (RefSeq), at 4,333,461 to 4,334,519
_3609
Shewana3_3610: Shewana3_3610 - MarR family transcriptional regulator (RefSeq), at 4,334,528 to 4,335,004
_3610
Shewana3_3611: Shewana3_3611 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 4,335,221 to 4,337,125
_3611
Position (kb)
4334
4335
4336 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 4333.607 kb on + strand, within Shewana3_3609 at 4333.607 kb on + strand, within Shewana3_3609 at 4333.607 kb on + strand, within Shewana3_3609 at 4333.647 kb on + strand, within Shewana3_3609 at 4333.927 kb on + strand, within Shewana3_3609 at 4334.011 kb on - strand, within Shewana3_3609 at 4334.052 kb on - strand, within Shewana3_3609 at 4334.246 kb on - strand, within Shewana3_3609 at 4334.260 kb on + strand, within Shewana3_3609 at 4334.547 kb on + strand at 4334.741 kb on - strand, within Shewana3_3610 at 4334.781 kb on - strand, within Shewana3_3610 at 4334.781 kb on - strand, within Shewana3_3610 at 4334.781 kb on - strand, within Shewana3_3610 at 4334.781 kb on - strand, within Shewana3_3610 at 4334.847 kb on - strand, within Shewana3_3610 at 4334.895 kb on - strand, within Shewana3_3610 at 4335.031 kb on + strand at 4335.251 kb on + strand at 4335.251 kb on + strand at 4335.251 kb on + strand at 4335.251 kb on + strand at 4335.422 kb on + strand, within Shewana3_3611 at 4335.432 kb on + strand, within Shewana3_3611 at 4335.980 kb on - strand, within Shewana3_3611 at 4335.980 kb on - strand, within Shewana3_3611 at 4336.004 kb on + strand, within Shewana3_3611
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 4,333,607 + Shewana3_3609 0.14 +0.2 4,333,607 + Shewana3_3609 0.14 +0.8 4,333,607 + Shewana3_3609 0.14 +0.7 4,333,647 + Shewana3_3609 0.18 +3.0 4,333,927 + Shewana3_3609 0.44 +0.5 4,334,011 - Shewana3_3609 0.52 +0.2 4,334,052 - Shewana3_3609 0.56 +0.2 4,334,246 - Shewana3_3609 0.74 +0.4 4,334,260 + Shewana3_3609 0.75 -0.4 4,334,547 + +1.0 4,334,741 - Shewana3_3610 0.45 -5.1 4,334,781 - Shewana3_3610 0.53 -4.3 4,334,781 - Shewana3_3610 0.53 -4.8 4,334,781 - Shewana3_3610 0.53 -4.8 4,334,781 - Shewana3_3610 0.53 -4.3 4,334,847 - Shewana3_3610 0.67 -4.7 4,334,895 - Shewana3_3610 0.77 -4.7 4,335,031 + -0.9 4,335,251 + +0.4 4,335,251 + -0.7 4,335,251 + -1.8 4,335,251 + +0.6 4,335,422 + Shewana3_3611 0.11 +1.0 4,335,432 + Shewana3_3611 0.11 +0.0 4,335,980 - Shewana3_3611 0.40 +0.1 4,335,980 - Shewana3_3611 0.40 -0.2 4,336,004 + Shewana3_3611 0.41 +0.0
Or see this region's nucleotide sequence