Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3570

Experiment: benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3569 and Shewana3_3570 overlap by 4 nucleotidesShewana3_3570 and Shewana3_3571 are separated by 129 nucleotides Shewana3_3569: Shewana3_3569 - MATE efflux family protein (RefSeq), at 4,280,766 to 4,282,124 _3569 Shewana3_3570: Shewana3_3570 - LysR family transcriptional regulator (RefSeq), at 4,282,121 to 4,283,116 _3570 Shewana3_3571: Shewana3_3571 - RND family efflux transporter MFP subunit (RefSeq), at 4,283,246 to 4,284,328 _3571 Position (kb) 4282 4283 4284Strain fitness (log2 ratio) -2 -1 0 1at 4281.133 kb on + strand, within Shewana3_3569at 4281.223 kb on + strand, within Shewana3_3569at 4281.369 kb on + strand, within Shewana3_3569at 4281.830 kb on - strand, within Shewana3_3569at 4281.885 kb on + strand, within Shewana3_3569at 4281.885 kb on + strand, within Shewana3_3569at 4281.917 kb on + strand, within Shewana3_3569at 4281.917 kb on + strand, within Shewana3_3569at 4282.007 kb on + strandat 4282.039 kb on - strandat 4282.408 kb on + strand, within Shewana3_3570at 4282.490 kb on - strand, within Shewana3_3570at 4282.587 kb on + strand, within Shewana3_3570at 4282.637 kb on + strand, within Shewana3_3570at 4282.662 kb on - strand, within Shewana3_3570at 4282.812 kb on - strand, within Shewana3_3570at 4283.332 kb on - strandat 4283.337 kb on + strandat 4283.437 kb on - strand, within Shewana3_3571at 4283.605 kb on + strand, within Shewana3_3571at 4283.605 kb on + strand, within Shewana3_3571at 4283.654 kb on - strand, within Shewana3_3571at 4283.656 kb on + strand, within Shewana3_3571at 4283.784 kb on - strand, within Shewana3_3571at 4283.856 kb on + strand, within Shewana3_3571

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml
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4,281,133 + Shewana3_3569 0.27 -2.2
4,281,223 + Shewana3_3569 0.34 +0.0
4,281,369 + Shewana3_3569 0.44 -1.6
4,281,830 - Shewana3_3569 0.78 -1.6
4,281,885 + Shewana3_3569 0.82 -1.8
4,281,885 + Shewana3_3569 0.82 -1.9
4,281,917 + Shewana3_3569 0.85 -1.6
4,281,917 + Shewana3_3569 0.85 -1.8
4,282,007 + -1.0
4,282,039 - -0.6
4,282,408 + Shewana3_3570 0.29 -0.5
4,282,490 - Shewana3_3570 0.37 -0.1
4,282,587 + Shewana3_3570 0.47 +0.5
4,282,637 + Shewana3_3570 0.52 -1.1
4,282,662 - Shewana3_3570 0.54 -0.0
4,282,812 - Shewana3_3570 0.69 -0.2
4,283,332 - -0.0
4,283,337 + +0.0
4,283,437 - Shewana3_3571 0.18 +0.1
4,283,605 + Shewana3_3571 0.33 -0.6
4,283,605 + Shewana3_3571 0.33 -0.3
4,283,654 - Shewana3_3571 0.38 +0.1
4,283,656 + Shewana3_3571 0.38 -0.1
4,283,784 - Shewana3_3571 0.50 +0.2
4,283,856 + Shewana3_3571 0.56 +0.4

Or see this region's nucleotide sequence