Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3570
Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | benzoic 0.4 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,281,133 | + | Shewana3_3569 | 0.27 | -2.2 | |
4,281,223 | + | Shewana3_3569 | 0.34 | +0.0 | |
4,281,369 | + | Shewana3_3569 | 0.44 | -1.6 | |
4,281,830 | - | Shewana3_3569 | 0.78 | -1.6 | |
4,281,885 | + | Shewana3_3569 | 0.82 | -1.8 | |
4,281,885 | + | Shewana3_3569 | 0.82 | -1.9 | |
4,281,917 | + | Shewana3_3569 | 0.85 | -1.6 | |
4,281,917 | + | Shewana3_3569 | 0.85 | -1.8 | |
4,282,007 | + | -1.0 | |||
4,282,039 | - | -0.6 | |||
4,282,408 | + | Shewana3_3570 | 0.29 | -0.5 | |
4,282,490 | - | Shewana3_3570 | 0.37 | -0.1 | |
4,282,587 | + | Shewana3_3570 | 0.47 | +0.5 | |
4,282,637 | + | Shewana3_3570 | 0.52 | -1.1 | |
4,282,662 | - | Shewana3_3570 | 0.54 | -0.0 | |
4,282,812 | - | Shewana3_3570 | 0.69 | -0.2 | |
4,283,332 | - | -0.0 | |||
4,283,337 | + | +0.0 | |||
4,283,437 | - | Shewana3_3571 | 0.18 | +0.1 | |
4,283,605 | + | Shewana3_3571 | 0.33 | -0.6 | |
4,283,605 | + | Shewana3_3571 | 0.33 | -0.3 | |
4,283,654 | - | Shewana3_3571 | 0.38 | +0.1 | |
4,283,656 | + | Shewana3_3571 | 0.38 | -0.1 | |
4,283,784 | - | Shewana3_3571 | 0.50 | +0.2 | |
4,283,856 | + | Shewana3_3571 | 0.56 | +0.4 |
Or see this region's nucleotide sequence