Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3240 and hmuV are separated by 11 nucleotides hmuV and Shewana3_3242 are separated by 82 nucleotides Shewana3_3242 and Shewana3_3243 overlap by 4 nucleotides Shewana3_3243 and Shewana3_3244 are separated by 111 nucleotides
Shewana3_3240: Shewana3_3240 - transport system permease protein (RefSeq), at 3,884,808 to 3,885,824
_3240
Shewana3_3241: hmuV - hemin importer ATP-binding subunit (RefSeq), at 3,885,836 to 3,886,654
hmuV
Shewana3_3242: Shewana3_3242 - hypothetical protein (RefSeq), at 3,886,737 to 3,887,078
_3242
Shewana3_3243: Shewana3_3243 - hypothetical protein (RefSeq), at 3,887,075 to 3,887,440
_3243
Shewana3_3244: Shewana3_3244 - FAD dependent oxidoreductase (RefSeq), at 3,887,552 to 3,889,027
_3244
Position (kb)
3885
3886
3887 Strain fitness (log2 ratio)
-1
0
1 at 3884.889 kb on + strand at 3884.922 kb on + strand, within Shewana3_3240 at 3885.120 kb on + strand, within Shewana3_3240 at 3885.128 kb on - strand, within Shewana3_3240 at 3885.206 kb on - strand, within Shewana3_3240 at 3885.206 kb on - strand, within Shewana3_3240 at 3885.211 kb on + strand, within Shewana3_3240 at 3885.322 kb on + strand, within Shewana3_3240 at 3885.530 kb on + strand, within Shewana3_3240 at 3885.543 kb on - strand, within Shewana3_3240 at 3885.612 kb on - strand, within Shewana3_3240 at 3885.648 kb on + strand, within Shewana3_3240 at 3885.731 kb on - strand at 3885.840 kb on - strand at 3886.018 kb on + strand, within hmuV at 3886.026 kb on - strand, within hmuV at 3886.142 kb on + strand, within hmuV at 3886.150 kb on - strand, within hmuV at 3886.329 kb on + strand, within hmuV at 3886.453 kb on + strand, within hmuV at 3886.461 kb on - strand, within hmuV at 3886.494 kb on - strand, within hmuV at 3886.529 kb on - strand, within hmuV at 3886.695 kb on + strand at 3886.698 kb on - strand at 3886.734 kb on - strand at 3886.734 kb on - strand at 3886.792 kb on - strand, within Shewana3_3242 at 3886.843 kb on + strand, within Shewana3_3242 at 3887.145 kb on + strand, within Shewana3_3243 at 3887.145 kb on + strand, within Shewana3_3243 at 3887.181 kb on - strand, within Shewana3_3243 at 3887.220 kb on - strand, within Shewana3_3243 at 3887.521 kb on + strand at 3887.616 kb on + strand at 3887.628 kb on + strand at 3887.636 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 3,884,889 + -0.4 3,884,922 + Shewana3_3240 0.11 -0.0 3,885,120 + Shewana3_3240 0.31 -0.6 3,885,128 - Shewana3_3240 0.31 -0.8 3,885,206 - Shewana3_3240 0.39 +0.1 3,885,206 - Shewana3_3240 0.39 +0.2 3,885,211 + Shewana3_3240 0.40 -1.1 3,885,322 + Shewana3_3240 0.51 +0.2 3,885,530 + Shewana3_3240 0.71 +0.5 3,885,543 - Shewana3_3240 0.72 -0.1 3,885,612 - Shewana3_3240 0.79 +1.0 3,885,648 + Shewana3_3240 0.83 -0.4 3,885,731 - -0.6 3,885,840 - +1.0 3,886,018 + hmuV Shewana3_3241 0.22 +0.2 3,886,026 - hmuV Shewana3_3241 0.23 +0.2 3,886,142 + hmuV Shewana3_3241 0.37 +0.0 3,886,150 - hmuV Shewana3_3241 0.38 -0.4 3,886,329 + hmuV Shewana3_3241 0.60 +1.0 3,886,453 + hmuV Shewana3_3241 0.75 +0.0 3,886,461 - hmuV Shewana3_3241 0.76 +0.8 3,886,494 - hmuV Shewana3_3241 0.80 -0.3 3,886,529 - hmuV Shewana3_3241 0.85 -0.4 3,886,695 + -0.1 3,886,698 - -0.3 3,886,734 - -0.0 3,886,734 - +0.3 3,886,792 - Shewana3_3242 0.16 +0.3 3,886,843 + Shewana3_3242 0.31 +0.6 3,887,145 + Shewana3_3243 0.19 -0.3 3,887,145 + Shewana3_3243 0.19 +0.3 3,887,181 - Shewana3_3243 0.29 +0.4 3,887,220 - Shewana3_3243 0.40 +0.0 3,887,521 + -0.2 3,887,616 + -1.0 3,887,628 + -0.5 3,887,636 - -0.4
Or see this region's nucleotide sequence