Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3189 and Shewana3_3190 are separated by 183 nucleotides Shewana3_3190 and Shewana3_3191 are separated by 9 nucleotides Shewana3_3191 and Shewana3_3192 overlap by 4 nucleotides
Shewana3_3189: Shewana3_3189 - sulfate ABC transporter, periplasmic sulfate-binding protein (RefSeq), at 3,827,075 to 3,828,082
_3189
Shewana3_3190: Shewana3_3190 - sulfate ABC transporter, inner membrane subunit CysT (RefSeq), at 3,828,266 to 3,829,111
_3190
Shewana3_3191: Shewana3_3191 - sulfate ABC transporter, inner membrane subunit CysW (RefSeq), at 3,829,121 to 3,829,990
_3191
Shewana3_3192: Shewana3_3192 - sulfate ABC transporter, ATPase subunit (RefSeq), at 3,829,987 to 3,831,117
_3192
Position (kb)
3828
3829
3830 Strain fitness (log2 ratio)
-2
-1
0
1 at 3827.282 kb on + strand, within Shewana3_3189 at 3827.282 kb on + strand, within Shewana3_3189 at 3827.287 kb on + strand, within Shewana3_3189 at 3827.290 kb on - strand, within Shewana3_3189 at 3827.420 kb on + strand, within Shewana3_3189 at 3827.564 kb on + strand, within Shewana3_3189 at 3827.564 kb on + strand, within Shewana3_3189 at 3827.564 kb on + strand, within Shewana3_3189 at 3827.610 kb on + strand, within Shewana3_3189 at 3828.004 kb on + strand at 3828.239 kb on + strand at 3828.247 kb on - strand at 3828.324 kb on + strand at 3828.324 kb on + strand at 3828.324 kb on + strand at 3828.332 kb on - strand at 3828.332 kb on - strand at 3828.603 kb on - strand, within Shewana3_3190 at 3828.695 kb on + strand, within Shewana3_3190 at 3828.695 kb on + strand, within Shewana3_3190 at 3828.703 kb on - strand, within Shewana3_3190 at 3828.802 kb on + strand, within Shewana3_3190 at 3828.804 kb on + strand, within Shewana3_3190 at 3828.861 kb on - strand, within Shewana3_3190 at 3828.884 kb on - strand, within Shewana3_3190 at 3828.886 kb on + strand, within Shewana3_3190 at 3828.908 kb on - strand, within Shewana3_3190 at 3828.908 kb on - strand, within Shewana3_3190 at 3828.944 kb on + strand, within Shewana3_3190 at 3828.952 kb on - strand, within Shewana3_3190 at 3829.077 kb on - strand at 3829.311 kb on + strand, within Shewana3_3191 at 3829.689 kb on + strand, within Shewana3_3191 at 3829.770 kb on - strand, within Shewana3_3191 at 3829.783 kb on - strand, within Shewana3_3191 at 3829.852 kb on + strand, within Shewana3_3191 at 3829.875 kb on + strand, within Shewana3_3191 at 3829.889 kb on - strand, within Shewana3_3191 at 3829.920 kb on + strand at 3829.921 kb on - strand at 3829.966 kb on - strand at 3829.983 kb on - strand at 3830.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 3,827,282 + Shewana3_3189 0.21 -0.4 3,827,282 + Shewana3_3189 0.21 -0.3 3,827,287 + Shewana3_3189 0.21 +0.7 3,827,290 - Shewana3_3189 0.21 -0.6 3,827,420 + Shewana3_3189 0.34 -0.3 3,827,564 + Shewana3_3189 0.49 -0.6 3,827,564 + Shewana3_3189 0.49 -0.7 3,827,564 + Shewana3_3189 0.49 -0.2 3,827,610 + Shewana3_3189 0.53 +0.1 3,828,004 + -0.6 3,828,239 + -0.4 3,828,247 - -0.8 3,828,324 + -0.2 3,828,324 + +0.3 3,828,324 + -0.7 3,828,332 - -0.3 3,828,332 - -0.6 3,828,603 - Shewana3_3190 0.40 -0.6 3,828,695 + Shewana3_3190 0.51 +1.0 3,828,695 + Shewana3_3190 0.51 -1.6 3,828,703 - Shewana3_3190 0.52 -0.0 3,828,802 + Shewana3_3190 0.63 -0.6 3,828,804 + Shewana3_3190 0.64 -0.8 3,828,861 - Shewana3_3190 0.70 -0.6 3,828,884 - Shewana3_3190 0.73 -0.5 3,828,886 + Shewana3_3190 0.73 -0.1 3,828,908 - Shewana3_3190 0.76 +0.4 3,828,908 - Shewana3_3190 0.76 +0.2 3,828,944 + Shewana3_3190 0.80 -2.3 3,828,952 - Shewana3_3190 0.81 -0.6 3,829,077 - -1.0 3,829,311 + Shewana3_3191 0.22 -0.3 3,829,689 + Shewana3_3191 0.65 -1.8 3,829,770 - Shewana3_3191 0.75 +0.0 3,829,783 - Shewana3_3191 0.76 +1.0 3,829,852 + Shewana3_3191 0.84 -0.3 3,829,875 + Shewana3_3191 0.87 +1.2 3,829,889 - Shewana3_3191 0.88 -0.6 3,829,920 + +0.1 3,829,921 - +0.0 3,829,966 - -1.6 3,829,983 - +1.0 3,830,076 - +1.0
Or see this region's nucleotide sequence