Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3118 and Shewana3_3119 are separated by 37 nucleotides Shewana3_3119 and Shewana3_3120 are separated by 11 nucleotides
Shewana3_3118: Shewana3_3118 - hypothetical protein (RefSeq), at 3,741,723 to 3,742,625
_3118
Shewana3_3119: Shewana3_3119 - hypothetical protein (RefSeq), at 3,742,663 to 3,743,322
_3119
Shewana3_3120: Shewana3_3120 - tryptophan halogenase (RefSeq), at 3,743,334 to 3,744,866
_3120
Position (kb)
3742
3743
3744 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3741.922 kb on + strand, within Shewana3_3118 at 3741.961 kb on + strand, within Shewana3_3118 at 3742.123 kb on + strand, within Shewana3_3118 at 3742.159 kb on - strand, within Shewana3_3118 at 3742.251 kb on + strand, within Shewana3_3118 at 3742.387 kb on + strand, within Shewana3_3118 at 3742.395 kb on - strand, within Shewana3_3118 at 3742.421 kb on - strand, within Shewana3_3118 at 3742.497 kb on - strand, within Shewana3_3118 at 3742.520 kb on + strand, within Shewana3_3118 at 3742.730 kb on + strand, within Shewana3_3119 at 3742.795 kb on - strand, within Shewana3_3119 at 3742.832 kb on + strand, within Shewana3_3119 at 3742.864 kb on + strand, within Shewana3_3119 at 3742.898 kb on - strand, within Shewana3_3119 at 3742.928 kb on - strand, within Shewana3_3119 at 3742.966 kb on + strand, within Shewana3_3119 at 3742.974 kb on - strand, within Shewana3_3119 at 3743.080 kb on + strand, within Shewana3_3119 at 3743.125 kb on + strand, within Shewana3_3119 at 3743.173 kb on + strand, within Shewana3_3119 at 3743.268 kb on - strand at 3743.357 kb on + strand at 3743.369 kb on + strand at 3743.479 kb on + strand at 3743.512 kb on + strand, within Shewana3_3120 at 3743.661 kb on + strand, within Shewana3_3120 at 3743.730 kb on + strand, within Shewana3_3120 at 3743.732 kb on - strand, within Shewana3_3120 at 3743.732 kb on - strand, within Shewana3_3120 at 3743.762 kb on + strand, within Shewana3_3120 at 3743.867 kb on - strand, within Shewana3_3120 at 3743.879 kb on - strand, within Shewana3_3120 at 3743.879 kb on - strand, within Shewana3_3120 at 3743.879 kb on - strand, within Shewana3_3120 at 3743.981 kb on + strand, within Shewana3_3120 at 3744.029 kb on - strand, within Shewana3_3120 at 3744.108 kb on - strand, within Shewana3_3120 at 3744.321 kb on - strand, within Shewana3_3120
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 3,741,922 + Shewana3_3118 0.22 -0.5 3,741,961 + Shewana3_3118 0.26 -1.0 3,742,123 + Shewana3_3118 0.44 +0.0 3,742,159 - Shewana3_3118 0.48 +0.0 3,742,251 + Shewana3_3118 0.58 +0.7 3,742,387 + Shewana3_3118 0.74 -1.5 3,742,395 - Shewana3_3118 0.74 +0.4 3,742,421 - Shewana3_3118 0.77 -0.4 3,742,497 - Shewana3_3118 0.86 +0.1 3,742,520 + Shewana3_3118 0.88 +2.0 3,742,730 + Shewana3_3119 0.10 +0.3 3,742,795 - Shewana3_3119 0.20 +1.0 3,742,832 + Shewana3_3119 0.26 -0.5 3,742,864 + Shewana3_3119 0.30 +1.0 3,742,898 - Shewana3_3119 0.36 +1.0 3,742,928 - Shewana3_3119 0.40 +1.0 3,742,966 + Shewana3_3119 0.46 +1.0 3,742,974 - Shewana3_3119 0.47 -0.7 3,743,080 + Shewana3_3119 0.63 -0.1 3,743,125 + Shewana3_3119 0.70 +0.6 3,743,173 + Shewana3_3119 0.77 +1.0 3,743,268 - +0.0 3,743,357 + -0.3 3,743,369 + -0.6 3,743,479 + -1.8 3,743,512 + Shewana3_3120 0.12 +0.0 3,743,661 + Shewana3_3120 0.21 +1.0 3,743,730 + Shewana3_3120 0.26 -1.2 3,743,732 - Shewana3_3120 0.26 +0.1 3,743,732 - Shewana3_3120 0.26 -0.8 3,743,762 + Shewana3_3120 0.28 +1.0 3,743,867 - Shewana3_3120 0.35 -0.7 3,743,879 - Shewana3_3120 0.36 +0.4 3,743,879 - Shewana3_3120 0.36 +1.4 3,743,879 - Shewana3_3120 0.36 +2.0 3,743,981 + Shewana3_3120 0.42 +0.3 3,744,029 - Shewana3_3120 0.45 +0.2 3,744,108 - Shewana3_3120 0.50 -1.8 3,744,321 - Shewana3_3120 0.64 -0.3
Or see this region's nucleotide sequence