Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3104
Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | benzoic 0.4 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,722,274 | - | Shewana3_3103 | 0.31 | -0.4 | |
3,722,284 | - | Shewana3_3103 | 0.32 | -1.5 | |
3,722,484 | + | Shewana3_3103 | 0.55 | +1.0 | |
3,722,492 | - | Shewana3_3103 | 0.56 | -0.6 | |
3,722,644 | + | Shewana3_3103 | 0.74 | +1.0 | |
3,722,662 | - | Shewana3_3103 | 0.76 | +0.1 | |
3,722,747 | + | Shewana3_3103 | 0.86 | +1.0 | |
3,722,786 | - | +0.1 | |||
3,722,830 | + | +1.0 | |||
3,722,848 | - | -0.0 | |||
3,722,949 | + | +1.0 | |||
3,723,072 | + | Shewana3_3104 | 0.15 | +2.0 | |
3,723,145 | - | Shewana3_3104 | 0.33 | -0.1 | |
3,723,145 | - | Shewana3_3104 | 0.33 | +0.5 | |
3,723,473 | + | +0.2 | |||
3,723,491 | - | -0.4 | |||
3,723,772 | - | Shewana3_3105 | 0.13 | -0.6 | |
3,723,854 | + | Shewana3_3105 | 0.19 | -0.4 | |
3,724,173 | - | Shewana3_3105 | 0.40 | -0.2 | |
3,724,240 | - | Shewana3_3105 | 0.44 | +0.3 | |
3,724,255 | + | Shewana3_3105 | 0.45 | -0.7 | |
3,724,273 | - | Shewana3_3105 | 0.47 | -0.4 |
Or see this region's nucleotide sequence