Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3071 and Shewana3_3072 are separated by 86 nucleotides Shewana3_3072 and Shewana3_3073 are separated by 470 nucleotides Shewana3_3073 and Shewana3_3074 are separated by 63 nucleotides
Shewana3_3071: Shewana3_3071 - glutamate-1-semialdehyde aminotransferase (RefSeq), at 3,683,258 to 3,684,550
_3071
Shewana3_3072: Shewana3_3072 - hypothetical protein (RefSeq), at 3,684,637 to 3,684,834
_3072
Shewana3_3073: Shewana3_3073 - citrate transporter (RefSeq), at 3,685,305 to 3,686,615
_3073
Shewana3_3074: Shewana3_3074 - general secretion pathway protein B (RefSeq), at 3,686,679 to 3,687,779
_3074
Position (kb)
3685
3686
3687 Strain fitness (log2 ratio)
-1
0
1 at 3684.557 kb on + strand at 3684.732 kb on + strand, within Shewana3_3072 at 3685.280 kb on - strand at 3685.501 kb on - strand, within Shewana3_3073 at 3686.223 kb on + strand, within Shewana3_3073 at 3686.347 kb on + strand, within Shewana3_3073 at 3686.387 kb on + strand, within Shewana3_3073 at 3686.395 kb on - strand, within Shewana3_3073 at 3686.395 kb on - strand, within Shewana3_3073 at 3687.099 kb on - strand, within Shewana3_3074 at 3687.187 kb on - strand, within Shewana3_3074 at 3687.316 kb on + strand, within Shewana3_3074 at 3687.612 kb on - strand, within Shewana3_3074
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 3,684,557 + +0.1 3,684,732 + Shewana3_3072 0.48 -1.0 3,685,280 - +0.4 3,685,501 - Shewana3_3073 0.15 +1.0 3,686,223 + Shewana3_3073 0.70 -1.3 3,686,347 + Shewana3_3073 0.79 -1.2 3,686,387 + Shewana3_3073 0.83 +0.0 3,686,395 - Shewana3_3073 0.83 +1.0 3,686,395 - Shewana3_3073 0.83 +1.0 3,687,099 - Shewana3_3074 0.38 -0.6 3,687,187 - Shewana3_3074 0.46 -0.6 3,687,316 + Shewana3_3074 0.58 +0.0 3,687,612 - Shewana3_3074 0.85 -0.2
Or see this region's nucleotide sequence