Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3008 and Shewana3_3009 are separated by 45 nucleotides Shewana3_3009 and Shewana3_3010 are separated by 163 nucleotides Shewana3_3010 and Shewana3_3011 are separated by 51 nucleotides
Shewana3_3008: Shewana3_3008 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,614,307 to 3,615,476
_3008
Shewana3_3009: Shewana3_3009 - hypothetical protein (RefSeq), at 3,615,522 to 3,615,857
_3009
Shewana3_3010: Shewana3_3010 - oxidoreductase FAD-binding subunit (RefSeq), at 3,616,021 to 3,617,163
_3010
Shewana3_3011: Shewana3_3011 - hydroxylamine reductase (RefSeq), at 3,617,215 to 3,618,879
_3011
Position (kb)
3616
3617
3618 Strain fitness (log2 ratio)
-1
0
1 at 3615.221 kb on - strand, within Shewana3_3008 at 3615.374 kb on - strand at 3615.527 kb on + strand at 3615.535 kb on - strand at 3616.051 kb on + strand at 3616.098 kb on + strand at 3616.098 kb on + strand at 3616.106 kb on - strand at 3616.106 kb on - strand at 3616.170 kb on - strand, within Shewana3_3010 at 3616.431 kb on + strand, within Shewana3_3010 at 3616.519 kb on - strand, within Shewana3_3010 at 3616.601 kb on + strand, within Shewana3_3010 at 3616.601 kb on + strand, within Shewana3_3010 at 3616.641 kb on + strand, within Shewana3_3010 at 3617.052 kb on + strand at 3617.160 kb on + strand at 3617.474 kb on - strand, within Shewana3_3011 at 3617.945 kb on - strand, within Shewana3_3011 at 3618.048 kb on + strand, within Shewana3_3011
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 3,615,221 - Shewana3_3008 0.78 -0.0 3,615,374 - -0.6 3,615,527 + -0.2 3,615,535 - -1.6 3,616,051 + -0.6 3,616,098 + -0.0 3,616,098 + +0.4 3,616,106 - -0.5 3,616,106 - +0.7 3,616,170 - Shewana3_3010 0.13 -0.7 3,616,431 + Shewana3_3010 0.36 +1.0 3,616,519 - Shewana3_3010 0.44 -0.9 3,616,601 + Shewana3_3010 0.51 -1.0 3,616,601 + Shewana3_3010 0.51 -0.0 3,616,641 + Shewana3_3010 0.54 -0.6 3,617,052 + -0.2 3,617,160 + -1.1 3,617,474 - Shewana3_3011 0.16 +0.4 3,617,945 - Shewana3_3011 0.44 -1.2 3,618,048 + Shewana3_3011 0.50 -0.0
Or see this region's nucleotide sequence