Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2933 and Shewana3_2934 overlap by 4 nucleotides Shewana3_2934 and Shewana3_2935 are separated by 17 nucleotides
Shewana3_2933: Shewana3_2933 - glycogen debranching enzyme GlgX (RefSeq), at 3,519,425 to 3,521,683
_2933
Shewana3_2934: Shewana3_2934 - glycogen branching enzyme (RefSeq), at 3,521,680 to 3,523,917
_2934
Shewana3_2935: Shewana3_2935 - 4-alpha-glucanotransferase (RefSeq), at 3,523,935 to 3,526,340
_2935
Position (kb)
3521
3522
3523
3524 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3520.791 kb on + strand, within Shewana3_2933 at 3521.025 kb on + strand, within Shewana3_2933 at 3521.081 kb on + strand, within Shewana3_2933 at 3521.085 kb on + strand, within Shewana3_2933 at 3521.138 kb on + strand, within Shewana3_2933 at 3521.435 kb on - strand, within Shewana3_2933 at 3521.449 kb on + strand, within Shewana3_2933 at 3521.885 kb on - strand at 3521.915 kb on - strand, within Shewana3_2934 at 3521.951 kb on - strand, within Shewana3_2934 at 3522.354 kb on + strand, within Shewana3_2934 at 3522.411 kb on + strand, within Shewana3_2934 at 3522.433 kb on + strand, within Shewana3_2934 at 3522.492 kb on + strand, within Shewana3_2934 at 3522.608 kb on + strand, within Shewana3_2934 at 3522.669 kb on + strand, within Shewana3_2934 at 3522.742 kb on - strand, within Shewana3_2934 at 3522.837 kb on + strand, within Shewana3_2934 at 3523.039 kb on + strand, within Shewana3_2934 at 3523.354 kb on - strand, within Shewana3_2934 at 3523.445 kb on + strand, within Shewana3_2934 at 3523.490 kb on + strand, within Shewana3_2934 at 3523.613 kb on + strand, within Shewana3_2934 at 3523.751 kb on - strand at 3523.859 kb on + strand at 3523.979 kb on + strand at 3524.124 kb on + strand at 3524.126 kb on + strand at 3524.132 kb on - strand at 3524.247 kb on - strand, within Shewana3_2935 at 3524.289 kb on - strand, within Shewana3_2935 at 3524.308 kb on + strand, within Shewana3_2935 at 3524.308 kb on + strand, within Shewana3_2935 at 3524.408 kb on + strand, within Shewana3_2935 at 3524.473 kb on + strand, within Shewana3_2935 at 3524.607 kb on - strand, within Shewana3_2935 at 3524.607 kb on - strand, within Shewana3_2935 at 3524.689 kb on + strand, within Shewana3_2935 at 3524.697 kb on - strand, within Shewana3_2935 at 3524.697 kb on - strand, within Shewana3_2935 at 3524.707 kb on - strand, within Shewana3_2935 at 3524.708 kb on - strand, within Shewana3_2935 at 3524.814 kb on - strand, within Shewana3_2935
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 3,520,791 + Shewana3_2933 0.60 -0.4 3,521,025 + Shewana3_2933 0.71 -0.0 3,521,081 + Shewana3_2933 0.73 -0.7 3,521,085 + Shewana3_2933 0.73 +1.1 3,521,138 + Shewana3_2933 0.76 -0.9 3,521,435 - Shewana3_2933 0.89 +0.0 3,521,449 + Shewana3_2933 0.90 +0.8 3,521,885 - -0.5 3,521,915 - Shewana3_2934 0.11 +0.1 3,521,951 - Shewana3_2934 0.12 -0.5 3,522,354 + Shewana3_2934 0.30 +0.5 3,522,411 + Shewana3_2934 0.33 +3.0 3,522,433 + Shewana3_2934 0.34 -0.0 3,522,492 + Shewana3_2934 0.36 -0.3 3,522,608 + Shewana3_2934 0.41 +1.2 3,522,669 + Shewana3_2934 0.44 +0.2 3,522,742 - Shewana3_2934 0.47 -0.2 3,522,837 + Shewana3_2934 0.52 +0.1 3,523,039 + Shewana3_2934 0.61 -1.4 3,523,354 - Shewana3_2934 0.75 +0.1 3,523,445 + Shewana3_2934 0.79 +0.2 3,523,490 + Shewana3_2934 0.81 -0.0 3,523,613 + Shewana3_2934 0.86 +1.0 3,523,751 - -0.8 3,523,859 + +0.4 3,523,979 + -0.1 3,524,124 + -1.2 3,524,126 + -0.4 3,524,132 - -0.2 3,524,247 - Shewana3_2935 0.13 -0.5 3,524,289 - Shewana3_2935 0.15 +0.0 3,524,308 + Shewana3_2935 0.16 -0.6 3,524,308 + Shewana3_2935 0.16 -0.3 3,524,408 + Shewana3_2935 0.20 +0.4 3,524,473 + Shewana3_2935 0.22 +0.1 3,524,607 - Shewana3_2935 0.28 -0.1 3,524,607 - Shewana3_2935 0.28 +1.0 3,524,689 + Shewana3_2935 0.31 -0.6 3,524,697 - Shewana3_2935 0.32 -0.9 3,524,697 - Shewana3_2935 0.32 +0.4 3,524,707 - Shewana3_2935 0.32 -0.4 3,524,708 - Shewana3_2935 0.32 -0.2 3,524,814 - Shewana3_2935 0.37 -0.0
Or see this region's nucleotide sequence