Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2799

Experiment: benzoic 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2798 and Shewana3_2799 are separated by 50 nucleotidesShewana3_2799 and dnaE are separated by 77 nucleotides Shewana3_2798: Shewana3_2798 - diguanylate cyclase (RefSeq), at 3,341,742 to 3,342,632 _2798 Shewana3_2799: Shewana3_2799 - tRNA(Ile)-lysidine synthetase (RefSeq), at 3,342,683 to 3,344,080 _2799 Shewana3_2800: dnaE - DNA polymerase III subunit alpha (RefSeq), at 3,344,158 to 3,347,634 dnaE Position (kb) 3342 3343 3344 3345Strain fitness (log2 ratio) -1 0 1at 3341.745 kb on + strandat 3341.885 kb on - strand, within Shewana3_2798at 3341.918 kb on + strand, within Shewana3_2798at 3342.055 kb on - strand, within Shewana3_2798at 3342.055 kb on - strand, within Shewana3_2798at 3342.371 kb on - strand, within Shewana3_2798

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml
remove
3,341,745 + +0.1
3,341,885 - Shewana3_2798 0.16 +0.9
3,341,918 + Shewana3_2798 0.20 -0.4
3,342,055 - Shewana3_2798 0.35 +0.9
3,342,055 - Shewana3_2798 0.35 -0.7
3,342,371 - Shewana3_2798 0.71 -0.1

Or see this region's nucleotide sequence