Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2670 and Shewana3_2671 overlap by 8 nucleotides Shewana3_2671 and Shewana3_2672 are separated by 426 nucleotides Shewana3_2672 and Shewana3_2673 are separated by 13 nucleotides
Shewana3_2670: Shewana3_2670 - ferrous iron transport protein B (RefSeq), at 3,187,357 to 3,189,651
_2670
Shewana3_2671: Shewana3_2671 - FeoA family protein (RefSeq), at 3,189,644 to 3,189,883
_2671
Shewana3_2672: Shewana3_2672 - cytochrome C family protein (RefSeq), at 3,190,310 to 3,191,275
_2672
Shewana3_2673: Shewana3_2673 - outer membrane protein, putative (RefSeq), at 3,191,289 to 3,193,427
_2673
Position (kb)
3190
3191
3192 Strain fitness (log2 ratio)
-1
0
1
2 at 3190.376 kb on + strand at 3190.591 kb on + strand, within Shewana3_2672 at 3190.632 kb on - strand, within Shewana3_2672 at 3191.075 kb on + strand, within Shewana3_2672 at 3191.233 kb on - strand at 3191.238 kb on + strand at 3191.238 kb on + strand at 3191.430 kb on + strand at 3191.494 kb on + strand at 3191.662 kb on - strand, within Shewana3_2673 at 3191.889 kb on + strand, within Shewana3_2673 at 3191.897 kb on - strand, within Shewana3_2673 at 3191.945 kb on + strand, within Shewana3_2673 at 3191.953 kb on - strand, within Shewana3_2673 at 3191.966 kb on - strand, within Shewana3_2673 at 3191.981 kb on + strand, within Shewana3_2673 at 3192.032 kb on - strand, within Shewana3_2673 at 3192.117 kb on + strand, within Shewana3_2673
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 3,190,376 + +0.9 3,190,591 + Shewana3_2672 0.29 +0.9 3,190,632 - Shewana3_2672 0.33 -1.1 3,191,075 + Shewana3_2672 0.79 -1.1 3,191,233 - -0.1 3,191,238 + -0.3 3,191,238 + +0.5 3,191,430 + +0.6 3,191,494 + +0.9 3,191,662 - Shewana3_2673 0.17 -1.1 3,191,889 + Shewana3_2673 0.28 +0.9 3,191,897 - Shewana3_2673 0.28 -0.4 3,191,945 + Shewana3_2673 0.31 +1.9 3,191,953 - Shewana3_2673 0.31 -0.0 3,191,966 - Shewana3_2673 0.32 +0.1 3,191,981 + Shewana3_2673 0.32 -0.2 3,192,032 - Shewana3_2673 0.35 -0.8 3,192,117 + Shewana3_2673 0.39 -0.9
Or see this region's nucleotide sequence