Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2670

Experiment: benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2669 and Shewana3_2670 are separated by 183 nucleotidesShewana3_2670 and Shewana3_2671 overlap by 8 nucleotidesShewana3_2671 and Shewana3_2672 are separated by 426 nucleotides Shewana3_2669: Shewana3_2669 - glutaminyl-tRNA synthetase (RefSeq), at 3,185,503 to 3,187,173 _2669 Shewana3_2670: Shewana3_2670 - ferrous iron transport protein B (RefSeq), at 3,187,357 to 3,189,651 _2670 Shewana3_2671: Shewana3_2671 - FeoA family protein (RefSeq), at 3,189,644 to 3,189,883 _2671 Shewana3_2672: Shewana3_2672 - cytochrome C family protein (RefSeq), at 3,190,310 to 3,191,275 _2672 Position (kb) 3187 3188 3189 3190Strain fitness (log2 ratio) -2 -1 0 1at 3187.260 kb on - strandat 3187.863 kb on - strand, within Shewana3_2670at 3188.454 kb on - strand, within Shewana3_2670at 3188.587 kb on - strand, within Shewana3_2670at 3189.217 kb on + strand, within Shewana3_2670at 3190.376 kb on + strandat 3190.591 kb on + strand, within Shewana3_2672at 3190.632 kb on - strand, within Shewana3_2672

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml
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3,187,260 - -0.5
3,187,863 - Shewana3_2670 0.22 -1.1
3,188,454 - Shewana3_2670 0.48 -0.6
3,188,587 - Shewana3_2670 0.54 -2.2
3,189,217 + Shewana3_2670 0.81 -2.1
3,190,376 + +0.9
3,190,591 + Shewana3_2672 0.29 +0.9
3,190,632 - Shewana3_2672 0.33 -1.1

Or see this region's nucleotide sequence