Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2356 and Shewana3_2357 are separated by 9 nucleotides Shewana3_2357 and Shewana3_2358 are separated by 155 nucleotides Shewana3_2358 and Shewana3_2359 are separated by 78 nucleotides Shewana3_2359 and Shewana3_2360 are separated by 77 nucleotides
Shewana3_2356: Shewana3_2356 - phage integrase family protein (RefSeq), at 2,835,885 to 2,837,063
_2356
Shewana3_2357: Shewana3_2357 - hypothetical protein (RefSeq), at 2,837,073 to 2,837,285
_2357
Shewana3_2358: Shewana3_2358 - hypothetical protein (RefSeq), at 2,837,441 to 2,837,677
_2358
Shewana3_2359: Shewana3_2359 - transposase IS3/IS911 family protein (RefSeq), at 2,837,756 to 2,838,001
_2359
Shewana3_2360: Shewana3_2360 - IS3 family transposase (RefSeq), at 2,838,079 to 2,838,426
_2360
Position (kb)
2837
2838 Strain fitness (log2 ratio)
-1
0
1
2 at 2836.126 kb on - strand, within Shewana3_2356 at 2836.270 kb on + strand, within Shewana3_2356 at 2836.297 kb on - strand, within Shewana3_2356 at 2836.297 kb on - strand, within Shewana3_2356 at 2836.367 kb on - strand, within Shewana3_2356 at 2836.391 kb on - strand, within Shewana3_2356 at 2836.416 kb on - strand, within Shewana3_2356 at 2836.438 kb on - strand, within Shewana3_2356 at 2836.689 kb on - strand, within Shewana3_2356 at 2836.986 kb on + strand at 2837.069 kb on - strand at 2837.134 kb on - strand, within Shewana3_2357 at 2837.207 kb on + strand, within Shewana3_2357 at 2837.259 kb on + strand, within Shewana3_2357 at 2837.754 kb on - strand at 2837.874 kb on + strand, within Shewana3_2359 at 2837.936 kb on - strand, within Shewana3_2359 at 2838.104 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 2,836,126 - Shewana3_2356 0.20 -0.1 2,836,270 + Shewana3_2356 0.33 +0.9 2,836,297 - Shewana3_2356 0.35 -0.3 2,836,297 - Shewana3_2356 0.35 +0.9 2,836,367 - Shewana3_2356 0.41 +0.9 2,836,391 - Shewana3_2356 0.43 +0.9 2,836,416 - Shewana3_2356 0.45 +1.9 2,836,438 - Shewana3_2356 0.47 +0.9 2,836,689 - Shewana3_2356 0.68 +0.9 2,836,986 + -0.1 2,837,069 - -0.3 2,837,134 - Shewana3_2357 0.29 -1.4 2,837,207 + Shewana3_2357 0.63 +0.9 2,837,259 + Shewana3_2357 0.87 -0.1 2,837,754 - -0.7 2,837,874 + Shewana3_2359 0.48 -0.1 2,837,936 - Shewana3_2359 0.73 -0.1 2,838,104 + -0.1
Or see this region's nucleotide sequence