Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2329 and Shewana3_2330 are separated by 23 nucleotides Shewana3_2330 and Shewana3_2331 are separated by 74 nucleotides Shewana3_2331 and Shewana3_2332 are separated by 6 nucleotides Shewana3_2332 and Shewana3_2333 are separated by 10 nucleotides
Shewana3_2329: Shewana3_2329 - major facilitator transporter (RefSeq), at 2,805,626 to 2,806,864
_2329
Shewana3_2330: Shewana3_2330 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,806,888 to 2,807,898
_2330
Shewana3_2331: Shewana3_2331 - protein tyrosine phosphatase, catalytic region (RefSeq), at 2,807,973 to 2,808,464
_2331
Shewana3_2332: Shewana3_2332 - redox-active disulfide protein 2 (RefSeq), at 2,808,471 to 2,808,707
_2332
Shewana3_2333: Shewana3_2333 - permease (RefSeq), at 2,808,718 to 2,809,716
_2333
Position (kb)
2806
2807
2808 Strain fitness (log2 ratio)
-2
-1
0
1 at 2805.888 kb on - strand, within Shewana3_2329 at 2805.924 kb on + strand, within Shewana3_2329 at 2805.989 kb on - strand, within Shewana3_2329 at 2806.046 kb on + strand, within Shewana3_2329 at 2806.054 kb on - strand, within Shewana3_2329 at 2806.054 kb on - strand, within Shewana3_2329 at 2806.054 kb on - strand, within Shewana3_2329 at 2806.066 kb on + strand, within Shewana3_2329 at 2806.439 kb on + strand, within Shewana3_2329 at 2806.520 kb on + strand, within Shewana3_2329 at 2806.553 kb on - strand, within Shewana3_2329 at 2806.647 kb on - strand, within Shewana3_2329 at 2806.723 kb on + strand, within Shewana3_2329 at 2806.726 kb on - strand, within Shewana3_2329 at 2806.731 kb on - strand, within Shewana3_2329 at 2806.940 kb on + strand at 2806.973 kb on + strand at 2806.981 kb on - strand at 2807.302 kb on - strand, within Shewana3_2330 at 2807.442 kb on - strand, within Shewana3_2330 at 2807.449 kb on - strand, within Shewana3_2330 at 2807.522 kb on + strand, within Shewana3_2330 at 2807.668 kb on - strand, within Shewana3_2330 at 2807.740 kb on + strand at 2807.847 kb on + strand at 2807.855 kb on - strand at 2808.121 kb on - strand, within Shewana3_2331 at 2808.203 kb on - strand, within Shewana3_2331 at 2808.203 kb on - strand, within Shewana3_2331 at 2808.293 kb on + strand, within Shewana3_2331 at 2808.293 kb on + strand, within Shewana3_2331 at 2808.293 kb on + strand, within Shewana3_2331 at 2808.567 kb on + strand, within Shewana3_2332 at 2808.666 kb on - strand, within Shewana3_2332
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 2,805,888 - Shewana3_2329 0.21 +0.9 2,805,924 + Shewana3_2329 0.24 +0.9 2,805,989 - Shewana3_2329 0.29 +0.9 2,806,046 + Shewana3_2329 0.34 +0.9 2,806,054 - Shewana3_2329 0.35 +0.9 2,806,054 - Shewana3_2329 0.35 +0.9 2,806,054 - Shewana3_2329 0.35 +0.9 2,806,066 + Shewana3_2329 0.36 +0.9 2,806,439 + Shewana3_2329 0.66 +0.9 2,806,520 + Shewana3_2329 0.72 +0.9 2,806,553 - Shewana3_2329 0.75 +1.5 2,806,647 - Shewana3_2329 0.82 -0.7 2,806,723 + Shewana3_2329 0.89 +0.9 2,806,726 - Shewana3_2329 0.89 +0.9 2,806,731 - Shewana3_2329 0.89 +0.9 2,806,940 + +0.9 2,806,973 + +0.9 2,806,981 - +1.5 2,807,302 - Shewana3_2330 0.41 +0.7 2,807,442 - Shewana3_2330 0.55 -1.9 2,807,449 - Shewana3_2330 0.55 +0.3 2,807,522 + Shewana3_2330 0.63 +0.9 2,807,668 - Shewana3_2330 0.77 +0.9 2,807,740 + +0.9 2,807,847 + +0.9 2,807,855 - -0.1 2,808,121 - Shewana3_2331 0.30 -0.3 2,808,203 - Shewana3_2331 0.47 -1.3 2,808,203 - Shewana3_2331 0.47 -0.6 2,808,293 + Shewana3_2331 0.65 +0.9 2,808,293 + Shewana3_2331 0.65 +0.9 2,808,293 + Shewana3_2331 0.65 +0.9 2,808,567 + Shewana3_2332 0.41 +0.9 2,808,666 - Shewana3_2332 0.82 +0.9
Or see this region's nucleotide sequence