Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2232 and Shewana3_2233 are separated by 91 nucleotides Shewana3_2233 and Shewana3_2234 are separated by 111 nucleotides
Shewana3_2232: Shewana3_2232 - lactoylglutathione lyase (RefSeq), at 2,684,707 to 2,685,117
_2232
Shewana3_2233: Shewana3_2233 - putative sulfite oxidase subunit YedZ (RefSeq), at 2,685,209 to 2,685,856
_2233
Shewana3_2234: Shewana3_2234 - putative sulfite oxidase subunit YedY (RefSeq), at 2,685,968 to 2,687,002
_2234
Position (kb)
2685
2686 Strain fitness (log2 ratio)
-1
0
1
2 at 2684.216 kb on + strand at 2684.405 kb on - strand at 2684.472 kb on - strand at 2684.716 kb on + strand at 2684.731 kb on - strand at 2685.112 kb on + strand at 2685.114 kb on - strand at 2685.206 kb on + strand at 2685.402 kb on - strand, within Shewana3_2233 at 2685.616 kb on + strand, within Shewana3_2233 at 2685.810 kb on - strand at 2686.034 kb on - strand at 2686.035 kb on - strand at 2686.096 kb on + strand, within Shewana3_2234 at 2686.326 kb on - strand, within Shewana3_2234 at 2686.453 kb on - strand, within Shewana3_2234 at 2686.647 kb on + strand, within Shewana3_2234 at 2686.655 kb on - strand, within Shewana3_2234 at 2686.657 kb on + strand, within Shewana3_2234 at 2686.752 kb on - strand, within Shewana3_2234 at 2686.778 kb on + strand, within Shewana3_2234
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 2,684,216 + -0.5 2,684,405 - -0.1 2,684,472 - -0.2 2,684,716 + +0.6 2,684,731 - +0.9 2,685,112 + -0.1 2,685,114 - -0.1 2,685,206 + +0.9 2,685,402 - Shewana3_2233 0.30 -0.8 2,685,616 + Shewana3_2233 0.63 +0.9 2,685,810 - -0.4 2,686,034 - -0.6 2,686,035 - +0.9 2,686,096 + Shewana3_2234 0.12 +0.4 2,686,326 - Shewana3_2234 0.35 -1.6 2,686,453 - Shewana3_2234 0.47 +0.9 2,686,647 + Shewana3_2234 0.66 +0.9 2,686,655 - Shewana3_2234 0.66 +1.9 2,686,657 + Shewana3_2234 0.67 -0.1 2,686,752 - Shewana3_2234 0.76 +1.9 2,686,778 + Shewana3_2234 0.78 +0.9
Or see this region's nucleotide sequence