Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2206
Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | benzoic 0.4 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,646,697 | + | Shewana3_2205 | 0.22 | +1.0 | |
2,646,697 | + | Shewana3_2205 | 0.22 | +1.0 | |
2,646,705 | - | Shewana3_2205 | 0.22 | +1.0 | |
2,646,817 | + | Shewana3_2205 | 0.32 | -0.3 | |
2,646,992 | + | Shewana3_2205 | 0.47 | +1.0 | |
2,647,092 | - | Shewana3_2205 | 0.55 | +0.4 | |
2,647,170 | + | Shewana3_2205 | 0.62 | -0.6 | |
2,647,170 | + | Shewana3_2205 | 0.62 | +1.0 | |
2,647,559 | - | +1.0 | |||
2,647,559 | - | +1.0 | |||
2,647,661 | - | -1.0 | |||
2,647,952 | + | Shewana3_2206 | 0.34 | +1.0 | |
2,648,126 | + | Shewana3_2206 | 0.52 | +1.0 | |
2,648,134 | - | Shewana3_2206 | 0.53 | +0.4 | |
2,648,229 | + | Shewana3_2206 | 0.63 | +1.0 | |
2,648,280 | - | Shewana3_2206 | 0.68 | +0.2 | |
2,648,284 | + | Shewana3_2206 | 0.69 | -0.0 | |
2,648,318 | + | Shewana3_2206 | 0.72 | +1.0 | |
2,648,318 | + | Shewana3_2206 | 0.72 | +1.0 | |
2,648,479 | + | Shewana3_2206 | 0.89 | +1.0 | |
2,648,487 | - | Shewana3_2206 | 0.90 | +0.6 | |
2,648,534 | + | -0.6 | |||
2,648,606 | - | +2.0 | |||
2,649,081 | - | +1.0 | |||
2,649,139 | - | -0.0 | |||
2,649,185 | - | -0.6 | |||
2,649,348 | + | +1.0 | |||
2,649,454 | + | +1.5 | |||
2,649,536 | + | Shewana3_2207 | 0.11 | +1.0 | |
2,649,544 | - | Shewana3_2207 | 0.12 | +0.7 | |
2,649,570 | - | Shewana3_2207 | 0.12 | +2.0 |
Or see this region's nucleotide sequence