Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2078
Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | benzoic 0.4 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,486,227 | - | Shewana3_2077 | 0.29 | +2.0 | |
2,486,458 | + | Shewana3_2077 | 0.49 | +0.8 | |
2,486,465 | + | Shewana3_2077 | 0.50 | -0.0 | |
2,486,466 | - | Shewana3_2077 | 0.50 | +1.3 | |
2,486,466 | - | Shewana3_2077 | 0.50 | -0.6 | |
2,486,506 | - | Shewana3_2077 | 0.53 | +1.0 | |
2,486,717 | + | Shewana3_2077 | 0.72 | +0.2 | |
2,486,725 | - | Shewana3_2077 | 0.73 | +1.0 | |
2,486,725 | - | Shewana3_2077 | 0.73 | -0.6 | |
2,486,801 | - | Shewana3_2077 | 0.79 | +1.0 | |
2,486,867 | + | Shewana3_2077 | 0.85 | -0.8 | |
2,486,877 | - | Shewana3_2077 | 0.86 | +0.2 | |
2,486,930 | - | -0.0 | |||
2,486,998 | + | -0.3 | |||
2,487,221 | + | Shewana3_2078 | 0.12 | +1.0 | |
2,487,244 | + | Shewana3_2078 | 0.14 | +1.0 | |
2,487,252 | - | Shewana3_2078 | 0.15 | +1.0 | |
2,487,544 | - | Shewana3_2078 | 0.44 | +1.0 | |
2,487,612 | + | Shewana3_2078 | 0.51 | +1.0 | |
2,487,985 | - | Shewana3_2078 | 0.88 | +1.0 | |
2,488,087 | + | -0.0 | |||
2,488,345 | + | +1.0 | |||
2,488,359 | - | +0.7 | |||
2,488,686 | + | Shewana3_2079 | 0.47 | -1.3 | |
2,488,696 | + | Shewana3_2079 | 0.48 | +1.0 | |
2,488,882 | - | Shewana3_2079 | 0.80 | +1.0 |
Or see this region's nucleotide sequence