Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1935

Experiment: benzoic 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1934 and Shewana3_1935 are separated by 369 nucleotidesShewana3_1935 and Shewana3_1936 are separated by 432 nucleotides Shewana3_1934: Shewana3_1934 - hemolysin III family channel protein (RefSeq), at 2,299,251 to 2,299,934 _1934 Shewana3_1935: Shewana3_1935 - hypothetical protein (RefSeq), at 2,300,304 to 2,301,413 _1935 Shewana3_1936: Shewana3_1936 - thiamine biosynthesis protein ThiC (RefSeq), at 2,301,846 to 2,304,008 _1936 Position (kb) 2300 2301 2302Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2299.361 kb on + strand, within Shewana3_1934at 2299.369 kb on + strand, within Shewana3_1934at 2299.397 kb on + strand, within Shewana3_1934at 2299.442 kb on + strand, within Shewana3_1934at 2299.606 kb on + strand, within Shewana3_1934at 2299.612 kb on - strand, within Shewana3_1934at 2299.697 kb on + strand, within Shewana3_1934at 2299.705 kb on - strand, within Shewana3_1934at 2299.718 kb on + strand, within Shewana3_1934at 2299.921 kb on - strandat 2299.933 kb on - strandat 2299.933 kb on - strandat 2299.944 kb on - strandat 2300.056 kb on + strandat 2300.126 kb on - strandat 2300.409 kb on - strandat 2300.513 kb on + strand, within Shewana3_1935at 2300.624 kb on + strand, within Shewana3_1935at 2300.632 kb on - strand, within Shewana3_1935at 2300.634 kb on - strand, within Shewana3_1935at 2300.699 kb on + strand, within Shewana3_1935at 2300.750 kb on + strand, within Shewana3_1935at 2301.007 kb on - strand, within Shewana3_1935at 2301.084 kb on + strand, within Shewana3_1935at 2301.388 kb on - strandat 2301.605 kb on + strandat 2301.658 kb on - strandat 2301.722 kb on + strandat 2301.729 kb on - strandat 2301.792 kb on + strandat 2301.889 kb on + strandat 2301.946 kb on + strandat 2301.947 kb on + strandat 2301.954 kb on - strandat 2301.955 kb on - strandat 2302.070 kb on + strand, within Shewana3_1936at 2302.078 kb on - strand, within Shewana3_1936at 2302.101 kb on + strand, within Shewana3_1936at 2302.118 kb on + strand, within Shewana3_1936at 2302.118 kb on + strand, within Shewana3_1936at 2302.126 kb on - strand, within Shewana3_1936at 2302.152 kb on + strand, within Shewana3_1936at 2302.152 kb on + strand, within Shewana3_1936

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml
remove
2,299,361 + Shewana3_1934 0.16 +1.0
2,299,369 + Shewana3_1934 0.17 -0.0
2,299,397 + Shewana3_1934 0.21 +1.0
2,299,442 + Shewana3_1934 0.28 +1.0
2,299,606 + Shewana3_1934 0.52 +1.0
2,299,612 - Shewana3_1934 0.53 +1.0
2,299,697 + Shewana3_1934 0.65 +1.0
2,299,705 - Shewana3_1934 0.66 +1.0
2,299,718 + Shewana3_1934 0.68 +1.0
2,299,921 - +1.0
2,299,933 - +1.0
2,299,933 - +1.0
2,299,944 - +1.0
2,300,056 + +1.0
2,300,126 - -1.0
2,300,409 - -0.0
2,300,513 + Shewana3_1935 0.19 +1.0
2,300,624 + Shewana3_1935 0.29 -0.6
2,300,632 - Shewana3_1935 0.30 -0.0
2,300,634 - Shewana3_1935 0.30 -0.0
2,300,699 + Shewana3_1935 0.36 +1.0
2,300,750 + Shewana3_1935 0.40 +1.0
2,301,007 - Shewana3_1935 0.63 -0.6
2,301,084 + Shewana3_1935 0.70 -0.0
2,301,388 - +1.0
2,301,605 + +1.0
2,301,658 - +1.0
2,301,722 + +1.0
2,301,729 - +1.0
2,301,792 + +1.0
2,301,889 + +2.0
2,301,946 + +1.0
2,301,947 + -0.6
2,301,954 - +1.0
2,301,955 - -0.0
2,302,070 + Shewana3_1936 0.10 -0.0
2,302,078 - Shewana3_1936 0.11 +0.2
2,302,101 + Shewana3_1936 0.12 +1.0
2,302,118 + Shewana3_1936 0.13 -2.8
2,302,118 + Shewana3_1936 0.13 +1.0
2,302,126 - Shewana3_1936 0.13 +0.3
2,302,152 + Shewana3_1936 0.14 +1.0
2,302,152 + Shewana3_1936 0.14 -0.0

Or see this region's nucleotide sequence