Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1820 and Shewana3_1821 overlap by 14 nucleotides Shewana3_1821 and Shewana3_1822 are separated by 9 nucleotides Shewana3_1822 and Shewana3_1823 are separated by 214 nucleotides
Shewana3_1820: Shewana3_1820 - hypothetical protein (RefSeq), at 2,151,348 to 2,153,036
_1820
Shewana3_1821: Shewana3_1821 - hypothetical protein (RefSeq), at 2,153,023 to 2,155,062
_1821
Shewana3_1822: Shewana3_1822 - zeta toxin family protein (RefSeq), at 2,155,072 to 2,155,788
_1822
Shewana3_1823: Shewana3_1823 - hypothetical protein (RefSeq), at 2,156,003 to 2,157,856
_1823
Position (kb)
2153
2154
2155
2156 Strain fitness (log2 ratio)
-2
-1
0
1 at 2152.026 kb on - strand, within Shewana3_1820 at 2152.034 kb on + strand, within Shewana3_1820 at 2152.096 kb on + strand, within Shewana3_1820 at 2152.103 kb on + strand, within Shewana3_1820 at 2152.219 kb on + strand, within Shewana3_1820 at 2152.228 kb on + strand, within Shewana3_1820 at 2152.236 kb on - strand, within Shewana3_1820 at 2152.236 kb on - strand, within Shewana3_1820 at 2152.366 kb on - strand, within Shewana3_1820 at 2152.480 kb on - strand, within Shewana3_1820 at 2152.542 kb on + strand, within Shewana3_1820 at 2152.542 kb on + strand, within Shewana3_1820 at 2152.552 kb on + strand, within Shewana3_1820 at 2152.552 kb on + strand, within Shewana3_1820 at 2152.622 kb on + strand, within Shewana3_1820 at 2152.810 kb on + strand, within Shewana3_1820 at 2152.882 kb on - strand at 2153.068 kb on + strand at 2153.088 kb on + strand at 2153.114 kb on - strand at 2153.114 kb on - strand at 2153.327 kb on + strand, within Shewana3_1821 at 2153.329 kb on + strand, within Shewana3_1821 at 2153.453 kb on + strand, within Shewana3_1821 at 2153.514 kb on - strand, within Shewana3_1821 at 2153.984 kb on + strand, within Shewana3_1821 at 2154.017 kb on + strand, within Shewana3_1821 at 2154.035 kb on - strand, within Shewana3_1821 at 2154.072 kb on + strand, within Shewana3_1821 at 2154.235 kb on + strand, within Shewana3_1821 at 2154.315 kb on + strand, within Shewana3_1821 at 2154.448 kb on + strand, within Shewana3_1821 at 2154.783 kb on + strand, within Shewana3_1821 at 2154.844 kb on - strand, within Shewana3_1821 at 2155.385 kb on - strand, within Shewana3_1822
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 2,152,026 - Shewana3_1820 0.40 -0.0 2,152,034 + Shewana3_1820 0.41 +1.6 2,152,096 + Shewana3_1820 0.44 +0.4 2,152,103 + Shewana3_1820 0.45 -1.4 2,152,219 + Shewana3_1820 0.52 +0.2 2,152,228 + Shewana3_1820 0.52 +1.0 2,152,236 - Shewana3_1820 0.53 +1.0 2,152,236 - Shewana3_1820 0.53 +1.0 2,152,366 - Shewana3_1820 0.60 +1.0 2,152,480 - Shewana3_1820 0.67 +1.0 2,152,542 + Shewana3_1820 0.71 +1.0 2,152,542 + Shewana3_1820 0.71 -0.0 2,152,552 + Shewana3_1820 0.71 +1.0 2,152,552 + Shewana3_1820 0.71 +1.0 2,152,622 + Shewana3_1820 0.75 -1.4 2,152,810 + Shewana3_1820 0.87 +0.6 2,152,882 - +1.0 2,153,068 + -0.1 2,153,088 + +1.0 2,153,114 - +1.0 2,153,114 - +1.0 2,153,327 + Shewana3_1821 0.15 -0.0 2,153,329 + Shewana3_1821 0.15 -1.0 2,153,453 + Shewana3_1821 0.21 +1.0 2,153,514 - Shewana3_1821 0.24 +1.0 2,153,984 + Shewana3_1821 0.47 -0.0 2,154,017 + Shewana3_1821 0.49 +1.0 2,154,035 - Shewana3_1821 0.50 +1.0 2,154,072 + Shewana3_1821 0.51 -0.6 2,154,235 + Shewana3_1821 0.59 -0.9 2,154,315 + Shewana3_1821 0.63 -0.8 2,154,448 + Shewana3_1821 0.70 -2.0 2,154,783 + Shewana3_1821 0.86 -0.0 2,154,844 - Shewana3_1821 0.89 +1.0 2,155,385 - Shewana3_1822 0.44 +1.0
Or see this region's nucleotide sequence