Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1781 and Shewana3_1782 are separated by 12 nucleotides Shewana3_1782 and Shewana3_1783 are separated by 55 nucleotides
Shewana3_1781: Shewana3_1781 - hypothetical protein (RefSeq), at 2,098,235 to 2,100,277
_1781
Shewana3_1782: Shewana3_1782 - hypothetical protein (RefSeq), at 2,100,290 to 2,101,654
_1782
Shewana3_1783: Shewana3_1783 - BNR repeat-containing protein (RefSeq), at 2,101,710 to 2,102,720
_1783
Position (kb)
2100
2101
2102 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2099.322 kb on - strand, within Shewana3_1781 at 2099.753 kb on - strand, within Shewana3_1781 at 2099.781 kb on + strand, within Shewana3_1781 at 2100.098 kb on - strand at 2100.127 kb on + strand at 2100.210 kb on + strand at 2100.333 kb on + strand at 2100.436 kb on + strand, within Shewana3_1782 at 2100.696 kb on - strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.721 kb on + strand, within Shewana3_1782 at 2100.729 kb on - strand, within Shewana3_1782 at 2100.958 kb on + strand, within Shewana3_1782 at 2100.958 kb on + strand, within Shewana3_1782 at 2100.966 kb on - strand, within Shewana3_1782 at 2101.013 kb on - strand, within Shewana3_1782 at 2101.073 kb on + strand, within Shewana3_1782 at 2101.475 kb on + strand, within Shewana3_1782 at 2101.512 kb on + strand, within Shewana3_1782 at 2101.512 kb on + strand, within Shewana3_1782 at 2101.520 kb on - strand at 2101.559 kb on + strand at 2101.672 kb on - strand at 2101.672 kb on - strand at 2101.702 kb on - strand at 2101.787 kb on + strand at 2102.092 kb on - strand, within Shewana3_1783 at 2102.140 kb on - strand, within Shewana3_1783 at 2102.375 kb on - strand, within Shewana3_1783 at 2102.398 kb on + strand, within Shewana3_1783 at 2102.542 kb on + strand, within Shewana3_1783
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 2,099,322 - Shewana3_1781 0.53 +1.0 2,099,753 - Shewana3_1781 0.74 +0.6 2,099,781 + Shewana3_1781 0.76 +0.0 2,100,098 - +2.0 2,100,127 + -0.6 2,100,210 + -1.0 2,100,333 + +1.0 2,100,436 + Shewana3_1782 0.11 +1.0 2,100,696 - Shewana3_1782 0.30 +0.2 2,100,721 + Shewana3_1782 0.32 +0.4 2,100,721 + Shewana3_1782 0.32 +0.5 2,100,721 + Shewana3_1782 0.32 +1.2 2,100,721 + Shewana3_1782 0.32 +1.2 2,100,721 + Shewana3_1782 0.32 +1.0 2,100,721 + Shewana3_1782 0.32 +2.6 2,100,729 - Shewana3_1782 0.32 +0.3 2,100,958 + Shewana3_1782 0.49 -1.2 2,100,958 + Shewana3_1782 0.49 +0.2 2,100,966 - Shewana3_1782 0.50 +0.2 2,101,013 - Shewana3_1782 0.53 +0.1 2,101,073 + Shewana3_1782 0.57 -0.0 2,101,475 + Shewana3_1782 0.87 +0.1 2,101,512 + Shewana3_1782 0.90 +1.2 2,101,512 + Shewana3_1782 0.90 -0.0 2,101,520 - +1.0 2,101,559 + -0.2 2,101,672 - +1.0 2,101,672 - +2.6 2,101,702 - +3.6 2,101,787 + +1.0 2,102,092 - Shewana3_1783 0.38 +1.0 2,102,140 - Shewana3_1783 0.43 -0.0 2,102,375 - Shewana3_1783 0.66 +1.0 2,102,398 + Shewana3_1783 0.68 +1.0 2,102,542 + Shewana3_1783 0.82 +0.3
Or see this region's nucleotide sequence