Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1694 and Shewana3_1695 are separated by 108 nucleotides Shewana3_1695 and Shewana3_1696 are separated by 102 nucleotides Shewana3_1696 and Shewana3_1697 are separated by 81 nucleotides Shewana3_1697 and Shewana3_1698 are separated by 209 nucleotides
Shewana3_1694: Shewana3_1694 - alcohol dehydrogenase (RefSeq), at 1,992,984 to 1,994,030
_1694
Shewana3_1695: Shewana3_1695 - cupin 2 domain-containing protein (RefSeq), at 1,994,139 to 1,994,576
_1695
Shewana3_1696: Shewana3_1696 - hypothetical protein (RefSeq), at 1,994,679 to 1,995,053
_1696
Shewana3_1697: Shewana3_1697 - cupin 2 domain-containing protein (RefSeq), at 1,995,135 to 1,995,674
_1697
Shewana3_1698: Shewana3_1698 - AraC family transcriptional regulator (RefSeq), at 1,995,884 to 1,996,792
_1698
Position (kb) 1994
1995
1996 Strain fitness (log2 ratio) -1
0
1 at 1993.732 kb on + strand, within Shewana3_1694 at 1993.732 kb on + strand, within Shewana3_1694 at 1993.740 kb on - strand, within Shewana3_1694 at 1993.775 kb on + strand, within Shewana3_1694 at 1993.786 kb on + strand, within Shewana3_1694 at 1993.879 kb on + strand, within Shewana3_1694 at 1993.933 kb on - strand at 1993.957 kb on - strand at 1994.108 kb on + strand at 1994.319 kb on - strand, within Shewana3_1695 at 1994.530 kb on - strand, within Shewana3_1695 at 1994.783 kb on + strand, within Shewana3_1696 at 1994.812 kb on + strand, within Shewana3_1696 at 1994.965 kb on - strand, within Shewana3_1696 at 1995.049 kb on - strand at 1995.270 kb on + strand, within Shewana3_1697 at 1995.398 kb on + strand, within Shewana3_1697 at 1995.553 kb on + strand, within Shewana3_1697 at 1995.750 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 1,993,732 + Shewana3_1694 0.71 +0.1 1,993,732 + Shewana3_1694 0.71 +1.0 1,993,740 - Shewana3_1694 0.72 -0.2 1,993,775 + Shewana3_1694 0.76 -1.4 1,993,786 + Shewana3_1694 0.77 +0.1 1,993,879 + Shewana3_1694 0.85 -0.8 1,993,933 - +0.6 1,993,957 - +1.0 1,994,108 + +0.4 1,994,319 - Shewana3_1695 0.41 +1.0 1,994,530 - Shewana3_1695 0.89 -0.0 1,994,783 + Shewana3_1696 0.28 -0.8 1,994,812 + Shewana3_1696 0.35 -1.3 1,994,965 - Shewana3_1696 0.76 +1.0 1,995,049 - +0.4 1,995,270 + Shewana3_1697 0.25 +0.4 1,995,398 + Shewana3_1697 0.49 -0.6 1,995,553 + Shewana3_1697 0.77 -0.6 1,995,750 - -0.2
Or see this region's nucleotide sequence