Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1687 and Shewana3_1688 are separated by 114 nucleotides Shewana3_1688 and Shewana3_1689 are separated by 1 nucleotides Shewana3_1689 and Shewana3_1690 are separated by 688 nucleotides
Shewana3_1687: Shewana3_1687 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,982,069 to 1,983,022
_1687
Shewana3_1688: Shewana3_1688 - acyl-CoA thioesterase II (RefSeq), at 1,983,137 to 1,984,003
_1688
Shewana3_1689: Shewana3_1689 - hypothetical protein (RefSeq), at 1,984,005 to 1,984,409
_1689
Shewana3_1690: Shewana3_1690 - protease domain-containing protein (RefSeq), at 1,985,098 to 1,989,000
_1690
Position (kb)
1984
1985 Strain fitness (log2 ratio)
-2
-1
0
1 at 1983.080 kb on + strand at 1983.100 kb on + strand at 1983.131 kb on + strand at 1983.286 kb on - strand, within Shewana3_1688 at 1983.448 kb on + strand, within Shewana3_1688 at 1983.670 kb on - strand, within Shewana3_1688 at 1983.951 kb on - strand at 1983.982 kb on - strand at 1984.137 kb on + strand, within Shewana3_1689 at 1984.145 kb on - strand, within Shewana3_1689 at 1984.197 kb on + strand, within Shewana3_1689 at 1984.337 kb on + strand, within Shewana3_1689 at 1984.382 kb on + strand at 1984.672 kb on - strand at 1985.124 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 1,983,080 + +1.0 1,983,100 + -0.3 1,983,131 + +1.0 1,983,286 - Shewana3_1688 0.17 -0.0 1,983,448 + Shewana3_1688 0.36 -1.0 1,983,670 - Shewana3_1688 0.61 +1.0 1,983,951 - +1.0 1,983,982 - +1.5 1,984,137 + Shewana3_1689 0.33 -2.1 1,984,145 - Shewana3_1689 0.35 +1.0 1,984,197 + Shewana3_1689 0.47 -1.3 1,984,337 + Shewana3_1689 0.82 +0.3 1,984,382 + -0.2 1,984,672 - -0.7 1,985,124 + -0.5
Or see this region's nucleotide sequence