Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1685 and Shewana3_1686 are separated by 152 nucleotides Shewana3_1686 and Shewana3_1687 are separated by 324 nucleotides
Shewana3_1685: Shewana3_1685 - extradiol ring-cleavage dioxygenase III subunit B (RefSeq), at 1,979,907 to 1,980,716
_1685
Shewana3_1686: Shewana3_1686 - 1,4-dihydroxy-2-naphtoate prenyltransferase (RefSeq), at 1,980,869 to 1,981,744
_1686
Shewana3_1687: Shewana3_1687 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,982,069 to 1,983,022
_1687
Position (kb)
1980
1981
1982 Strain fitness (log2 ratio)
-1
0
1
2 at 1980.050 kb on - strand, within Shewana3_1685 at 1980.271 kb on + strand, within Shewana3_1685 at 1980.468 kb on - strand, within Shewana3_1685 at 1980.468 kb on - strand, within Shewana3_1685 at 1980.622 kb on + strand, within Shewana3_1685 at 1980.904 kb on - strand at 1981.229 kb on + strand, within Shewana3_1686 at 1981.242 kb on + strand, within Shewana3_1686 at 1981.444 kb on + strand, within Shewana3_1686 at 1981.494 kb on - strand, within Shewana3_1686 at 1981.618 kb on + strand, within Shewana3_1686 at 1981.777 kb on + strand at 1981.999 kb on + strand at 1982.007 kb on - strand at 1982.007 kb on - strand at 1982.187 kb on - strand, within Shewana3_1687 at 1982.550 kb on + strand, within Shewana3_1687 at 1982.593 kb on + strand, within Shewana3_1687 at 1982.634 kb on + strand, within Shewana3_1687
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 1,980,050 - Shewana3_1685 0.18 +1.0 1,980,271 + Shewana3_1685 0.45 -0.5 1,980,468 - Shewana3_1685 0.69 +2.0 1,980,468 - Shewana3_1685 0.69 -1.0 1,980,622 + Shewana3_1685 0.88 +0.7 1,980,904 - -0.3 1,981,229 + Shewana3_1686 0.41 +1.0 1,981,242 + Shewana3_1686 0.43 -0.0 1,981,444 + Shewana3_1686 0.66 +2.6 1,981,494 - Shewana3_1686 0.71 -0.0 1,981,618 + Shewana3_1686 0.86 -1.0 1,981,777 + -0.0 1,981,999 + -0.6 1,982,007 - +0.5 1,982,007 - -0.7 1,982,187 - Shewana3_1687 0.12 +1.0 1,982,550 + Shewana3_1687 0.50 -0.3 1,982,593 + Shewana3_1687 0.55 -0.6 1,982,634 + Shewana3_1687 0.59 +1.0
Or see this region's nucleotide sequence