Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1542 and folX are separated by 73 nucleotides folX and Shewana3_1544 are separated by 97 nucleotides Shewana3_1544 and Shewana3_1545 are separated by 6 nucleotides
Shewana3_1542: Shewana3_1542 - hypothetical protein (RefSeq), at 1,799,862 to 1,800,752
_1542
Shewana3_1543: folX - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase (RefSeq), at 1,800,826 to 1,801,191
folX
Shewana3_1544: Shewana3_1544 - hypothetical protein (RefSeq), at 1,801,289 to 1,802,395
_1544
Shewana3_1545: Shewana3_1545 - hypothetical protein (RefSeq), at 1,802,402 to 1,803,313
_1545
Position (kb)
1801
1802
1803 Strain fitness (log2 ratio)
-1
0
1 at 1800.526 kb on + strand, within Shewana3_1542 at 1800.526 kb on + strand, within Shewana3_1542 at 1800.607 kb on - strand, within Shewana3_1542 at 1800.871 kb on + strand, within folX at 1801.395 kb on + strand at 1801.487 kb on - strand, within Shewana3_1544 at 1801.690 kb on + strand, within Shewana3_1544 at 1801.693 kb on - strand, within Shewana3_1544 at 1801.890 kb on - strand, within Shewana3_1544 at 1801.910 kb on + strand, within Shewana3_1544 at 1801.968 kb on - strand, within Shewana3_1544 at 1802.094 kb on - strand, within Shewana3_1544 at 1802.366 kb on + strand at 1802.384 kb on + strand at 1802.541 kb on + strand, within Shewana3_1545 at 1802.826 kb on - strand, within Shewana3_1545 at 1803.018 kb on + strand, within Shewana3_1545 at 1803.026 kb on - strand, within Shewana3_1545 at 1803.300 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 1,800,526 + Shewana3_1542 0.75 +0.1 1,800,526 + Shewana3_1542 0.75 +1.0 1,800,607 - Shewana3_1542 0.84 +1.0 1,800,871 + folX Shewana3_1543 0.12 +1.1 1,801,395 + +0.3 1,801,487 - Shewana3_1544 0.18 +1.0 1,801,690 + Shewana3_1544 0.36 -0.7 1,801,693 - Shewana3_1544 0.36 +1.0 1,801,890 - Shewana3_1544 0.54 +1.0 1,801,910 + Shewana3_1544 0.56 +0.4 1,801,968 - Shewana3_1544 0.61 -1.0 1,802,094 - Shewana3_1544 0.73 -0.0 1,802,366 + -1.3 1,802,384 + -0.1 1,802,541 + Shewana3_1545 0.15 -0.0 1,802,826 - Shewana3_1545 0.46 +0.1 1,803,018 + Shewana3_1545 0.68 +0.4 1,803,026 - Shewana3_1545 0.68 +1.0 1,803,300 + -0.2
Or see this region's nucleotide sequence