Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1468 and Shewana3_1469 are separated by 114 nucleotides Shewana3_1469 and Shewana3_1470 are separated by 69 nucleotides
Shewana3_1468: Shewana3_1468 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq), at 1,706,764 to 1,707,708
_1468
Shewana3_1469: Shewana3_1469 - chorismate synthase (RefSeq), at 1,707,823 to 1,708,917
_1469
Shewana3_1470: Shewana3_1470 - major facilitator transporter (RefSeq), at 1,708,987 to 1,710,156
_1470
Position (kb)
1707
1708
1709 Strain fitness (log2 ratio)
-1
0
1
2 at 1706.941 kb on + strand, within Shewana3_1468 at 1707.110 kb on - strand, within Shewana3_1468 at 1707.224 kb on + strand, within Shewana3_1468 at 1707.299 kb on + strand, within Shewana3_1468 at 1707.398 kb on + strand, within Shewana3_1468 at 1707.484 kb on + strand, within Shewana3_1468 at 1707.881 kb on + strand at 1707.952 kb on + strand, within Shewana3_1469 at 1708.184 kb on - strand, within Shewana3_1469 at 1708.286 kb on + strand, within Shewana3_1469 at 1708.572 kb on - strand, within Shewana3_1469 at 1708.741 kb on + strand, within Shewana3_1469 at 1708.792 kb on + strand, within Shewana3_1469 at 1708.825 kb on + strand at 1708.889 kb on + strand at 1708.889 kb on + strand at 1708.897 kb on - strand at 1708.897 kb on - strand at 1709.006 kb on - strand at 1709.080 kb on - strand at 1709.161 kb on - strand, within Shewana3_1470 at 1709.305 kb on - strand, within Shewana3_1470 at 1709.443 kb on + strand, within Shewana3_1470 at 1709.481 kb on - strand, within Shewana3_1470 at 1709.586 kb on + strand, within Shewana3_1470 at 1709.669 kb on + strand, within Shewana3_1470 at 1709.669 kb on + strand, within Shewana3_1470 at 1709.677 kb on - strand, within Shewana3_1470 at 1709.677 kb on - strand, within Shewana3_1470
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 1,706,941 + Shewana3_1468 0.19 -0.4 1,707,110 - Shewana3_1468 0.37 +0.9 1,707,224 + Shewana3_1468 0.49 +0.5 1,707,299 + Shewana3_1468 0.57 +0.5 1,707,398 + Shewana3_1468 0.67 +1.8 1,707,484 + Shewana3_1468 0.76 +0.1 1,707,881 + -0.7 1,707,952 + Shewana3_1469 0.12 -0.9 1,708,184 - Shewana3_1469 0.33 +0.9 1,708,286 + Shewana3_1469 0.42 -0.3 1,708,572 - Shewana3_1469 0.68 +0.9 1,708,741 + Shewana3_1469 0.84 -1.2 1,708,792 + Shewana3_1469 0.88 -0.4 1,708,825 + -0.3 1,708,889 + +1.2 1,708,889 + -1.2 1,708,897 - +0.9 1,708,897 - +0.9 1,709,006 - +1.9 1,709,080 - -0.1 1,709,161 - Shewana3_1470 0.15 +0.7 1,709,305 - Shewana3_1470 0.27 -0.1 1,709,443 + Shewana3_1470 0.39 -1.1 1,709,481 - Shewana3_1470 0.42 +0.9 1,709,586 + Shewana3_1470 0.51 -0.1 1,709,669 + Shewana3_1470 0.58 -0.1 1,709,669 + Shewana3_1470 0.58 -0.0 1,709,677 - Shewana3_1470 0.59 -0.1 1,709,677 - Shewana3_1470 0.59 +0.9
Or see this region's nucleotide sequence