Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1436
Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | benzoic 0.4 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 1,664,512 | + | tgt | Shewana3_1435 | 0.19 | -1.2 |
| 1,664,552 | + | tgt | Shewana3_1435 | 0.23 | -0.6 |
| 1,664,771 | + | tgt | Shewana3_1435 | 0.42 | +0.5 |
| 1,664,785 | + | tgt | Shewana3_1435 | 0.43 | +0.9 |
| 1,665,238 | + | tgt | Shewana3_1435 | 0.84 | -0.1 |
| 1,665,265 | + | tgt | Shewana3_1435 | 0.86 | -0.3 |
| 1,665,628 | + | Shewana3_1436 | 0.45 | +0.4 | |
| 1,665,628 | + | Shewana3_1436 | 0.45 | -0.1 | |
| 1,665,688 | + | Shewana3_1436 | 0.66 | -0.6 | |
| 1,665,790 | + | -0.6 | |||
| 1,666,090 | + | secD | Shewana3_1437 | 0.16 | +0.3 |
| 1,666,108 | + | secD | Shewana3_1437 | 0.17 | +0.9 |
| 1,666,185 | + | secD | Shewana3_1437 | 0.21 | -0.2 |
| 1,666,456 | + | secD | Shewana3_1437 | 0.36 | +0.9 |
| 1,666,573 | + | secD | Shewana3_1437 | 0.42 | -0.1 |
| 1,666,678 | - | secD | Shewana3_1437 | 0.48 | +0.9 |
Or see this region's nucleotide sequence