Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1278

Experiment: benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1277 and Shewana3_1278 are separated by 289 nucleotidesShewana3_1278 and Shewana3_1279 overlap by 4 nucleotidesShewana3_1279 and Shewana3_1280 are separated by 233 nucleotides Shewana3_1277: Shewana3_1277 - major facilitator transporter (RefSeq), at 1,488,130 to 1,489,353 _1277 Shewana3_1278: Shewana3_1278 - LysR family transcriptional regulator (RefSeq), at 1,489,643 to 1,490,584 _1278 Shewana3_1279: Shewana3_1279 - putative lipoprotein (RefSeq), at 1,490,581 to 1,490,844 _1279 Shewana3_1280: Shewana3_1280 - conjugal transfer coupling protein TraG (RefSeq), at 1,491,078 to 1,493,075 _1280 Position (kb) 1489 1490 1491Strain fitness (log2 ratio) -1 0 1at 1488.649 kb on + strand, within Shewana3_1277at 1488.668 kb on - strand, within Shewana3_1277at 1488.690 kb on + strand, within Shewana3_1277at 1488.868 kb on - strand, within Shewana3_1277at 1488.961 kb on - strand, within Shewana3_1277at 1489.053 kb on + strand, within Shewana3_1277at 1489.105 kb on - strand, within Shewana3_1277at 1489.166 kb on + strand, within Shewana3_1277at 1489.176 kb on + strand, within Shewana3_1277at 1489.270 kb on + strandat 1489.272 kb on + strandat 1489.280 kb on - strandat 1489.280 kb on - strandat 1489.738 kb on + strand, within Shewana3_1278at 1489.816 kb on - strand, within Shewana3_1278at 1489.831 kb on - strand, within Shewana3_1278at 1490.038 kb on + strand, within Shewana3_1278at 1490.038 kb on + strand, within Shewana3_1278at 1490.038 kb on + strand, within Shewana3_1278at 1490.046 kb on - strand, within Shewana3_1278at 1490.055 kb on - strand, within Shewana3_1278at 1490.198 kb on + strand, within Shewana3_1278at 1490.245 kb on - strand, within Shewana3_1278at 1490.275 kb on - strand, within Shewana3_1278at 1490.357 kb on - strand, within Shewana3_1278at 1490.357 kb on - strand, within Shewana3_1278at 1490.420 kb on + strand, within Shewana3_1278at 1490.475 kb on + strand, within Shewana3_1278at 1490.641 kb on - strand, within Shewana3_1279at 1490.718 kb on + strand, within Shewana3_1279at 1490.808 kb on + strand, within Shewana3_1279at 1490.808 kb on + strand, within Shewana3_1279at 1490.816 kb on - strand, within Shewana3_1279at 1490.846 kb on + strandat 1490.854 kb on - strandat 1491.171 kb on + strandat 1491.235 kb on - strandat 1491.324 kb on + strand, within Shewana3_1280at 1491.400 kb on + strand, within Shewana3_1280at 1491.512 kb on - strand, within Shewana3_1280at 1491.578 kb on + strand, within Shewana3_1280

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml
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1,488,649 + Shewana3_1277 0.42 -0.1
1,488,668 - Shewana3_1277 0.44 -0.6
1,488,690 + Shewana3_1277 0.46 -0.3
1,488,868 - Shewana3_1277 0.60 +0.5
1,488,961 - Shewana3_1277 0.68 -0.8
1,489,053 + Shewana3_1277 0.75 -0.8
1,489,105 - Shewana3_1277 0.80 -1.1
1,489,166 + Shewana3_1277 0.85 -0.1
1,489,176 + Shewana3_1277 0.85 +1.2
1,489,270 + -0.6
1,489,272 + +0.3
1,489,280 - +0.5
1,489,280 - +0.9
1,489,738 + Shewana3_1278 0.10 -0.3
1,489,816 - Shewana3_1278 0.18 -0.8
1,489,831 - Shewana3_1278 0.20 +0.8
1,490,038 + Shewana3_1278 0.42 -0.6
1,490,038 + Shewana3_1278 0.42 -0.1
1,490,038 + Shewana3_1278 0.42 +0.9
1,490,046 - Shewana3_1278 0.43 -0.1
1,490,055 - Shewana3_1278 0.44 +0.4
1,490,198 + Shewana3_1278 0.59 -0.1
1,490,245 - Shewana3_1278 0.64 -0.1
1,490,275 - Shewana3_1278 0.67 -0.1
1,490,357 - Shewana3_1278 0.76 +0.4
1,490,357 - Shewana3_1278 0.76 +1.6
1,490,420 + Shewana3_1278 0.82 +0.1
1,490,475 + Shewana3_1278 0.88 +0.6
1,490,641 - Shewana3_1279 0.23 +1.7
1,490,718 + Shewana3_1279 0.52 -0.2
1,490,808 + Shewana3_1279 0.86 -1.2
1,490,808 + Shewana3_1279 0.86 +0.1
1,490,816 - Shewana3_1279 0.89 +1.1
1,490,846 + -0.8
1,490,854 - -0.8
1,491,171 + -1.1
1,491,235 - -0.7
1,491,324 + Shewana3_1280 0.12 -0.2
1,491,400 + Shewana3_1280 0.16 -0.0
1,491,512 - Shewana3_1280 0.22 -1.3
1,491,578 + Shewana3_1280 0.25 +0.3

Or see this region's nucleotide sequence