Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1277 and Shewana3_1278 are separated by 289 nucleotides Shewana3_1278 and Shewana3_1279 overlap by 4 nucleotides Shewana3_1279 and Shewana3_1280 are separated by 233 nucleotides
Shewana3_1277: Shewana3_1277 - major facilitator transporter (RefSeq), at 1,488,130 to 1,489,353
_1277
Shewana3_1278: Shewana3_1278 - LysR family transcriptional regulator (RefSeq), at 1,489,643 to 1,490,584
_1278
Shewana3_1279: Shewana3_1279 - putative lipoprotein (RefSeq), at 1,490,581 to 1,490,844
_1279
Shewana3_1280: Shewana3_1280 - conjugal transfer coupling protein TraG (RefSeq), at 1,491,078 to 1,493,075
_1280
Position (kb)
1489
1490
1491 Strain fitness (log2 ratio)
-1
0
1 at 1488.649 kb on + strand, within Shewana3_1277 at 1488.668 kb on - strand, within Shewana3_1277 at 1488.690 kb on + strand, within Shewana3_1277 at 1488.868 kb on - strand, within Shewana3_1277 at 1488.961 kb on - strand, within Shewana3_1277 at 1489.053 kb on + strand, within Shewana3_1277 at 1489.105 kb on - strand, within Shewana3_1277 at 1489.166 kb on + strand, within Shewana3_1277 at 1489.176 kb on + strand, within Shewana3_1277 at 1489.270 kb on + strand at 1489.272 kb on + strand at 1489.280 kb on - strand at 1489.280 kb on - strand at 1489.738 kb on + strand, within Shewana3_1278 at 1489.816 kb on - strand, within Shewana3_1278 at 1489.831 kb on - strand, within Shewana3_1278 at 1490.038 kb on + strand, within Shewana3_1278 at 1490.038 kb on + strand, within Shewana3_1278 at 1490.038 kb on + strand, within Shewana3_1278 at 1490.046 kb on - strand, within Shewana3_1278 at 1490.055 kb on - strand, within Shewana3_1278 at 1490.198 kb on + strand, within Shewana3_1278 at 1490.245 kb on - strand, within Shewana3_1278 at 1490.275 kb on - strand, within Shewana3_1278 at 1490.357 kb on - strand, within Shewana3_1278 at 1490.357 kb on - strand, within Shewana3_1278 at 1490.420 kb on + strand, within Shewana3_1278 at 1490.475 kb on + strand, within Shewana3_1278 at 1490.641 kb on - strand, within Shewana3_1279 at 1490.718 kb on + strand, within Shewana3_1279 at 1490.808 kb on + strand, within Shewana3_1279 at 1490.808 kb on + strand, within Shewana3_1279 at 1490.816 kb on - strand, within Shewana3_1279 at 1490.846 kb on + strand at 1490.854 kb on - strand at 1491.171 kb on + strand at 1491.235 kb on - strand at 1491.324 kb on + strand, within Shewana3_1280 at 1491.400 kb on + strand, within Shewana3_1280 at 1491.512 kb on - strand, within Shewana3_1280 at 1491.578 kb on + strand, within Shewana3_1280
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 1,488,649 + Shewana3_1277 0.42 -0.1 1,488,668 - Shewana3_1277 0.44 -0.6 1,488,690 + Shewana3_1277 0.46 -0.3 1,488,868 - Shewana3_1277 0.60 +0.5 1,488,961 - Shewana3_1277 0.68 -0.8 1,489,053 + Shewana3_1277 0.75 -0.8 1,489,105 - Shewana3_1277 0.80 -1.1 1,489,166 + Shewana3_1277 0.85 -0.1 1,489,176 + Shewana3_1277 0.85 +1.2 1,489,270 + -0.6 1,489,272 + +0.3 1,489,280 - +0.5 1,489,280 - +0.9 1,489,738 + Shewana3_1278 0.10 -0.3 1,489,816 - Shewana3_1278 0.18 -0.8 1,489,831 - Shewana3_1278 0.20 +0.8 1,490,038 + Shewana3_1278 0.42 -0.6 1,490,038 + Shewana3_1278 0.42 -0.1 1,490,038 + Shewana3_1278 0.42 +0.9 1,490,046 - Shewana3_1278 0.43 -0.1 1,490,055 - Shewana3_1278 0.44 +0.4 1,490,198 + Shewana3_1278 0.59 -0.1 1,490,245 - Shewana3_1278 0.64 -0.1 1,490,275 - Shewana3_1278 0.67 -0.1 1,490,357 - Shewana3_1278 0.76 +0.4 1,490,357 - Shewana3_1278 0.76 +1.6 1,490,420 + Shewana3_1278 0.82 +0.1 1,490,475 + Shewana3_1278 0.88 +0.6 1,490,641 - Shewana3_1279 0.23 +1.7 1,490,718 + Shewana3_1279 0.52 -0.2 1,490,808 + Shewana3_1279 0.86 -1.2 1,490,808 + Shewana3_1279 0.86 +0.1 1,490,816 - Shewana3_1279 0.89 +1.1 1,490,846 + -0.8 1,490,854 - -0.8 1,491,171 + -1.1 1,491,235 - -0.7 1,491,324 + Shewana3_1280 0.12 -0.2 1,491,400 + Shewana3_1280 0.16 -0.0 1,491,512 - Shewana3_1280 0.22 -1.3 1,491,578 + Shewana3_1280 0.25 +0.3
Or see this region's nucleotide sequence