Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1246 and Shewana3_1247 are separated by 25 nucleotides Shewana3_1247 and Shewana3_1248 are separated by 13 nucleotides Shewana3_1248 and Shewana3_1249 are separated by 165 nucleotides
Shewana3_1246: Shewana3_1246 - transcriptional regulator-like protein (RefSeq), at 1,460,354 to 1,460,659
_1246
Shewana3_1247: Shewana3_1247 - hypothetical protein (RefSeq), at 1,460,685 to 1,461,503
_1247
Shewana3_1248: Shewana3_1248 - hypothetical protein (RefSeq), at 1,461,517 to 1,462,800
_1248
Shewana3_1249: Shewana3_1249 - ATPase-like protein (RefSeq), at 1,462,966 to 1,463,565
_1249
Position (kb)
1461
1462
1463 Strain fitness (log2 ratio)
-2
-1
0
1 at 1460.854 kb on - strand, within Shewana3_1247 at 1460.982 kb on - strand, within Shewana3_1247 at 1461.091 kb on - strand, within Shewana3_1247 at 1461.225 kb on - strand, within Shewana3_1247 at 1461.356 kb on + strand, within Shewana3_1247 at 1461.356 kb on + strand, within Shewana3_1247 at 1461.364 kb on - strand, within Shewana3_1247 at 1461.409 kb on + strand, within Shewana3_1247 at 1461.498 kb on + strand at 1461.643 kb on - strand at 1461.718 kb on + strand, within Shewana3_1248 at 1461.736 kb on - strand, within Shewana3_1248 at 1461.799 kb on - strand, within Shewana3_1248 at 1461.859 kb on + strand, within Shewana3_1248 at 1461.859 kb on + strand, within Shewana3_1248 at 1461.859 kb on + strand, within Shewana3_1248 at 1461.872 kb on - strand, within Shewana3_1248 at 1462.517 kb on + strand, within Shewana3_1248 at 1462.806 kb on + strand at 1463.036 kb on + strand, within Shewana3_1249 at 1463.042 kb on - strand, within Shewana3_1249 at 1463.198 kb on - strand, within Shewana3_1249 at 1463.260 kb on + strand, within Shewana3_1249 at 1463.318 kb on + strand, within Shewana3_1249 at 1463.356 kb on - strand, within Shewana3_1249 at 1463.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 1,460,854 - Shewana3_1247 0.21 +0.6 1,460,982 - Shewana3_1247 0.36 -2.1 1,461,091 - Shewana3_1247 0.50 +0.5 1,461,225 - Shewana3_1247 0.66 +0.9 1,461,356 + Shewana3_1247 0.82 +0.3 1,461,356 + Shewana3_1247 0.82 -0.8 1,461,364 - Shewana3_1247 0.83 +0.9 1,461,409 + Shewana3_1247 0.88 +0.9 1,461,498 + -0.9 1,461,643 - -2.6 1,461,718 + Shewana3_1248 0.16 -1.0 1,461,736 - Shewana3_1248 0.17 -0.2 1,461,799 - Shewana3_1248 0.22 -1.1 1,461,859 + Shewana3_1248 0.27 +0.3 1,461,859 + Shewana3_1248 0.27 -0.1 1,461,859 + Shewana3_1248 0.27 -0.9 1,461,872 - Shewana3_1248 0.28 -0.5 1,462,517 + Shewana3_1248 0.78 -0.1 1,462,806 + +0.9 1,463,036 + Shewana3_1249 0.12 -0.6 1,463,042 - Shewana3_1249 0.13 +0.9 1,463,198 - Shewana3_1249 0.39 +0.5 1,463,260 + Shewana3_1249 0.49 -0.3 1,463,318 + Shewana3_1249 0.59 +0.9 1,463,356 - Shewana3_1249 0.65 +0.4 1,463,615 - -0.8
Or see this region's nucleotide sequence