Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1058

Experiment: benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1056 and Shewana3_1057 are separated by 26 nucleotidesShewana3_1057 and Shewana3_1058 are separated by 516 nucleotidesShewana3_1058 and Shewana3_1059 are separated by 25 nucleotidesShewana3_1059 and Shewana3_1060 are separated by 100 nucleotides Shewana3_1056: Shewana3_1056 - trimethylamine-N-oxide reductase c-type cytochrome TorC (RefSeq), at 1,238,687 to 1,239,865 _1056 Shewana3_1057: Shewana3_1057 - periplasmic nitrate reductase NapE (RefSeq), at 1,239,892 to 1,240,062 _1057 Shewana3_1058: Shewana3_1058 - xanthine/uracil/vitamin C permease (RefSeq), at 1,240,579 to 1,241,931 _1058 Shewana3_1059: Shewana3_1059 - CBS domain-containing protein (RefSeq), at 1,241,957 to 1,242,388 _1059 Shewana3_1060: Shewana3_1060 - phospholipid/glycerol acyltransferase (RefSeq), at 1,242,489 to 1,244,363 _1060 Position (kb) 1240 1241 1242Strain fitness (log2 ratio) -2 -1 0 1at 1239.714 kb on - strand, within Shewana3_1056at 1239.734 kb on - strand, within Shewana3_1056at 1240.453 kb on + strandat 1240.583 kb on - strandat 1240.743 kb on - strand, within Shewana3_1058at 1240.796 kb on + strand, within Shewana3_1058at 1240.815 kb on - strand, within Shewana3_1058at 1240.817 kb on - strand, within Shewana3_1058at 1240.896 kb on - strand, within Shewana3_1058at 1241.294 kb on + strand, within Shewana3_1058at 1241.791 kb on - strand, within Shewana3_1058at 1241.801 kb on + strandat 1241.806 kb on + strandat 1241.809 kb on - strandat 1241.809 kb on - strandat 1241.830 kb on - strandat 1241.882 kb on + strandat 1242.200 kb on + strand, within Shewana3_1059at 1242.200 kb on + strand, within Shewana3_1059at 1242.427 kb on + strandat 1242.427 kb on + strandat 1242.427 kb on + strandat 1242.613 kb on - strandat 1242.749 kb on + strand, within Shewana3_1060at 1242.771 kb on - strand, within Shewana3_1060at 1242.771 kb on - strand, within Shewana3_1060at 1242.775 kb on + strand, within Shewana3_1060at 1242.818 kb on + strand, within Shewana3_1060at 1242.818 kb on + strand, within Shewana3_1060at 1242.818 kb on + strand, within Shewana3_1060

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml
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1,239,714 - Shewana3_1056 0.87 +0.0
1,239,734 - Shewana3_1056 0.89 +0.6
1,240,453 + -0.3
1,240,583 - +1.0
1,240,743 - Shewana3_1058 0.12 -2.0
1,240,796 + Shewana3_1058 0.16 -0.3
1,240,815 - Shewana3_1058 0.17 +1.0
1,240,817 - Shewana3_1058 0.18 -0.6
1,240,896 - Shewana3_1058 0.23 -1.7
1,241,294 + Shewana3_1058 0.53 -0.3
1,241,791 - Shewana3_1058 0.90 +1.0
1,241,801 + -0.2
1,241,806 + +0.1
1,241,809 - +1.0
1,241,809 - +1.0
1,241,830 - +1.0
1,241,882 + -0.1
1,242,200 + Shewana3_1059 0.56 -1.3
1,242,200 + Shewana3_1059 0.56 -0.6
1,242,427 + +1.0
1,242,427 + -1.4
1,242,427 + -0.8
1,242,613 - +0.0
1,242,749 + Shewana3_1060 0.14 +0.6
1,242,771 - Shewana3_1060 0.15 -0.5
1,242,771 - Shewana3_1060 0.15 -0.5
1,242,775 + Shewana3_1060 0.15 +0.5
1,242,818 + Shewana3_1060 0.18 +0.1
1,242,818 + Shewana3_1060 0.18 +0.0
1,242,818 + Shewana3_1060 0.18 -0.0

Or see this region's nucleotide sequence