Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0649 and Shewana3_0650 are separated by 352 nucleotides Shewana3_0650 and Shewana3_0651 are separated by 586 nucleotides
Shewana3_0649: Shewana3_0649 - dipeptidyl-peptidase IV (RefSeq), at 766,577 to 768,868
_0649
Shewana3_0650: Shewana3_0650 - two-component response regulator (RefSeq), at 769,221 to 769,937
_0650
Shewana3_0651: Shewana3_0651 - hypothetical protein (RefSeq), at 770,524 to 770,958
_0651
Position (kb) 769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 768.261 kb on + strand, within Shewana3_0649 at 768.274 kb on - strand, within Shewana3_0649 at 768.387 kb on + strand, within Shewana3_0649 at 768.683 kb on + strand at 768.729 kb on - strand at 768.829 kb on + strand at 768.883 kb on + strand at 768.920 kb on + strand at 768.922 kb on + strand at 768.945 kb on - strand at 768.966 kb on + strand at 768.973 kb on + strand at 769.016 kb on - strand at 769.084 kb on + strand at 769.258 kb on - strand at 769.433 kb on - strand, within Shewana3_0650 at 769.433 kb on - strand, within Shewana3_0650 at 769.487 kb on - strand, within Shewana3_0650 at 769.538 kb on - strand, within Shewana3_0650 at 769.580 kb on - strand, within Shewana3_0650 at 769.589 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.842 kb on - strand, within Shewana3_0650 at 769.842 kb on - strand, within Shewana3_0650 at 770.232 kb on - strand at 770.267 kb on + strand at 770.349 kb on + strand at 770.397 kb on + strand at 770.496 kb on - strand at 770.636 kb on + strand, within Shewana3_0651 at 770.646 kb on + strand, within Shewana3_0651 at 770.897 kb on + strand, within Shewana3_0651 at 770.897 kb on + strand, within Shewana3_0651 at 770.917 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 768,261 + Shewana3_0649 0.73 -0.0 768,274 - Shewana3_0649 0.74 -0.2 768,387 + Shewana3_0649 0.79 +0.0 768,683 + -0.3 768,729 - -0.4 768,829 + -0.9 768,883 + +0.0 768,920 + -0.3 768,922 + -0.4 768,945 - -0.9 768,966 + -0.2 768,973 + -0.0 769,016 - +0.2 769,084 + -0.8 769,258 - -1.1 769,433 - Shewana3_0650 0.30 -3.5 769,433 - Shewana3_0650 0.30 -2.0 769,487 - Shewana3_0650 0.37 -0.5 769,538 - Shewana3_0650 0.44 -1.0 769,580 - Shewana3_0650 0.50 -1.9 769,589 - Shewana3_0650 0.51 -2.4 769,821 - Shewana3_0650 0.84 -0.9 769,821 - Shewana3_0650 0.84 -1.2 769,821 - Shewana3_0650 0.84 +0.2 769,842 - Shewana3_0650 0.87 -2.4 769,842 - Shewana3_0650 0.87 -0.9 770,232 - +0.0 770,267 + +1.0 770,349 + -0.9 770,397 + +1.0 770,496 - -0.1 770,636 + Shewana3_0651 0.26 -2.5 770,646 + Shewana3_0651 0.28 +0.1 770,897 + Shewana3_0651 0.86 -0.3 770,897 + Shewana3_0651 0.86 -0.2 770,917 + -0.1
Or see this region's nucleotide sequence