Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdhR and aceE are separated by 80 nucleotides aceE and Shewana3_0427 are separated by 12 nucleotides
Shewana3_0425: pdhR - transcriptional regulator PdhR (RefSeq), at 484,423 to 485,175
pdhR
Shewana3_0426: aceE - pyruvate dehydrogenase subunit E1 (RefSeq), at 485,256 to 487,922
aceE
Shewana3_0427: Shewana3_0427 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq), at 487,935 to 489,941
_0427
Position (kb) 485
486
487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 484.513 kb on + strand, within pdhR at 484.918 kb on + strand, within pdhR at 485.241 kb on + strand at 485.271 kb on + strand at 485.278 kb on + strand at 485.314 kb on - strand at 485.325 kb on + strand at 485.408 kb on + strand at 485.416 kb on - strand at 485.800 kb on - strand, within aceE at 485.882 kb on + strand, within aceE at 485.989 kb on - strand, within aceE at 486.036 kb on - strand, within aceE at 486.068 kb on + strand, within aceE at 486.068 kb on + strand, within aceE at 486.305 kb on + strand, within aceE at 486.313 kb on - strand, within aceE at 486.369 kb on + strand, within aceE at 486.369 kb on + strand, within aceE at 486.369 kb on + strand, within aceE at 486.369 kb on + strand, within aceE at 486.369 kb on + strand, within aceE at 486.369 kb on + strand, within aceE at 486.369 kb on + strand, within aceE at 486.377 kb on - strand, within aceE at 486.459 kb on + strand, within aceE at 486.467 kb on - strand, within aceE at 486.627 kb on + strand, within aceE at 486.635 kb on - strand, within aceE at 486.713 kb on + strand, within aceE at 486.723 kb on - strand, within aceE at 487.017 kb on + strand, within aceE at 487.088 kb on + strand, within aceE at 487.096 kb on - strand, within aceE at 487.192 kb on - strand, within aceE at 487.210 kb on - strand, within aceE at 487.230 kb on - strand, within aceE at 487.493 kb on - strand, within aceE at 487.679 kb on + strand at 487.717 kb on + strand at 487.725 kb on + strand at 487.733 kb on - strand at 487.780 kb on + strand at 487.800 kb on - strand at 487.851 kb on + strand at 487.991 kb on - strand at 488.097 kb on + strand at 488.193 kb on + strand, within Shewana3_0427 at 488.340 kb on + strand, within Shewana3_0427 at 488.506 kb on + strand, within Shewana3_0427 at 488.514 kb on - strand, within Shewana3_0427 at 488.725 kb on + strand, within Shewana3_0427 at 488.733 kb on - strand, within Shewana3_0427 at 488.835 kb on + strand, within Shewana3_0427 at 488.914 kb on - strand, within Shewana3_0427
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 484,513 + pdhR Shewana3_0425 0.12 +0.0 484,918 + pdhR Shewana3_0425 0.66 -0.4 485,241 + -1.4 485,271 + -1.9 485,278 + -1.8 485,314 - -0.9 485,325 + -1.7 485,408 + -1.7 485,416 - -0.0 485,800 - aceE Shewana3_0426 0.20 -0.6 485,882 + aceE Shewana3_0426 0.23 -0.9 485,989 - aceE Shewana3_0426 0.27 +1.0 486,036 - aceE Shewana3_0426 0.29 -2.2 486,068 + aceE Shewana3_0426 0.30 -2.2 486,068 + aceE Shewana3_0426 0.30 -2.2 486,305 + aceE Shewana3_0426 0.39 -2.0 486,313 - aceE Shewana3_0426 0.40 +1.0 486,369 + aceE Shewana3_0426 0.42 -1.3 486,369 + aceE Shewana3_0426 0.42 -1.8 486,369 + aceE Shewana3_0426 0.42 -3.5 486,369 + aceE Shewana3_0426 0.42 -1.7 486,369 + aceE Shewana3_0426 0.42 -1.7 486,369 + aceE Shewana3_0426 0.42 -1.7 486,369 + aceE Shewana3_0426 0.42 -1.5 486,377 - aceE Shewana3_0426 0.42 +1.0 486,459 + aceE Shewana3_0426 0.45 -2.0 486,467 - aceE Shewana3_0426 0.45 +1.0 486,627 + aceE Shewana3_0426 0.51 -1.5 486,635 - aceE Shewana3_0426 0.52 -0.6 486,713 + aceE Shewana3_0426 0.55 -1.7 486,723 - aceE Shewana3_0426 0.55 -0.2 487,017 + aceE Shewana3_0426 0.66 -1.5 487,088 + aceE Shewana3_0426 0.69 -1.7 487,096 - aceE Shewana3_0426 0.69 -0.0 487,192 - aceE Shewana3_0426 0.73 +1.0 487,210 - aceE Shewana3_0426 0.73 -0.0 487,230 - aceE Shewana3_0426 0.74 -1.2 487,493 - aceE Shewana3_0426 0.84 +0.4 487,679 + -1.6 487,717 + -2.2 487,725 + -1.8 487,733 - -2.6 487,780 + -1.8 487,800 - +0.4 487,851 + -1.3 487,991 - +1.0 488,097 + -1.5 488,193 + Shewana3_0427 0.13 -1.6 488,340 + Shewana3_0427 0.20 -1.6 488,506 + Shewana3_0427 0.28 -1.2 488,514 - Shewana3_0427 0.29 -2.3 488,725 + Shewana3_0427 0.39 -2.1 488,733 - Shewana3_0427 0.40 -1.8 488,835 + Shewana3_0427 0.45 -2.0 488,914 - Shewana3_0427 0.49 -1.3
Or see this region's nucleotide sequence