Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0291 and Shewana3_0292 are separated by 105 nucleotides Shewana3_0292 and Shewana3_0293 are separated by 80 nucleotides
Shewana3_0291: Shewana3_0291 - Zn-dependent hydrolase of the beta-lactamase fold (RefSeq), at 323,374 to 324,492
_0291
Shewana3_0292: Shewana3_0292 - TetR family transcriptional regulator (RefSeq), at 324,598 to 325,209
_0292
Shewana3_0293: Shewana3_0293 - anaerobic C4-dicarboxylate transporter (RefSeq), at 325,290 to 326,633
_0293
Position (kb) 324
325
326 Strain fitness (log2 ratio) -2
-1
0
1 at 323.612 kb on + strand, within Shewana3_0291 at 323.643 kb on - strand, within Shewana3_0291 at 323.729 kb on - strand, within Shewana3_0291 at 323.900 kb on + strand, within Shewana3_0291 at 324.077 kb on - strand, within Shewana3_0291 at 324.365 kb on - strand, within Shewana3_0291 at 324.810 kb on + strand, within Shewana3_0292 at 324.810 kb on + strand, within Shewana3_0292 at 325.102 kb on - strand, within Shewana3_0292 at 325.102 kb on - strand, within Shewana3_0292 at 325.103 kb on - strand, within Shewana3_0292 at 325.139 kb on + strand, within Shewana3_0292 at 325.342 kb on - strand at 325.507 kb on + strand, within Shewana3_0293 at 325.608 kb on + strand, within Shewana3_0293 at 325.636 kb on - strand, within Shewana3_0293 at 325.674 kb on + strand, within Shewana3_0293 at 325.682 kb on - strand, within Shewana3_0293 at 325.682 kb on - strand, within Shewana3_0293 at 325.717 kb on + strand, within Shewana3_0293 at 325.725 kb on - strand, within Shewana3_0293 at 325.958 kb on + strand, within Shewana3_0293 at 326.037 kb on - strand, within Shewana3_0293 at 326.066 kb on - strand, within Shewana3_0293 at 326.146 kb on - strand, within Shewana3_0293
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 323,612 + Shewana3_0291 0.21 +0.1 323,643 - Shewana3_0291 0.24 -0.6 323,729 - Shewana3_0291 0.32 -0.9 323,900 + Shewana3_0291 0.47 +0.1 324,077 - Shewana3_0291 0.63 -0.2 324,365 - Shewana3_0291 0.89 -0.5 324,810 + Shewana3_0292 0.35 -0.7 324,810 + Shewana3_0292 0.35 -0.8 325,102 - Shewana3_0292 0.82 -1.0 325,102 - Shewana3_0292 0.82 -0.3 325,103 - Shewana3_0292 0.83 -1.0 325,139 + Shewana3_0292 0.88 -1.0 325,342 - -0.4 325,507 + Shewana3_0293 0.16 +0.1 325,608 + Shewana3_0293 0.24 +1.0 325,636 - Shewana3_0293 0.26 -0.0 325,674 + Shewana3_0293 0.29 -2.0 325,682 - Shewana3_0293 0.29 +0.2 325,682 - Shewana3_0293 0.29 -0.0 325,717 + Shewana3_0293 0.32 -0.2 325,725 - Shewana3_0293 0.32 +0.0 325,958 + Shewana3_0293 0.50 -0.2 326,037 - Shewana3_0293 0.56 -0.2 326,066 - Shewana3_0293 0.58 -0.3 326,146 - Shewana3_0293 0.64 -0.4
Or see this region's nucleotide sequence