Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0174

Experiment: benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0173 and Shewana3_0174 are separated by 67 nucleotidesShewana3_0174 and Shewana3_0175 are separated by 57 nucleotides Shewana3_0173: Shewana3_0173 - phospholipid/glycerol acyltransferase (RefSeq), at 205,219 to 207,084 _0173 Shewana3_0174: Shewana3_0174 - hypothetical protein (RefSeq), at 207,152 to 208,465 _0174 Shewana3_0175: Shewana3_0175 - tRNA 2-selenouridine synthase (RefSeq), at 208,523 to 209,620 _0175 Position (kb) 207 208 209Strain fitness (log2 ratio) -1 0 1 2at 206.163 kb on + strand, within Shewana3_0173at 206.183 kb on + strand, within Shewana3_0173at 206.248 kb on + strand, within Shewana3_0173at 206.405 kb on + strand, within Shewana3_0173at 206.476 kb on + strand, within Shewana3_0173at 206.595 kb on - strand, within Shewana3_0173at 206.623 kb on + strand, within Shewana3_0173at 206.902 kb on + strandat 206.995 kb on + strandat 207.013 kb on + strandat 207.063 kb on - strandat 207.198 kb on + strandat 207.295 kb on + strand, within Shewana3_0174at 207.321 kb on + strand, within Shewana3_0174at 207.329 kb on - strand, within Shewana3_0174at 207.380 kb on + strand, within Shewana3_0174at 207.400 kb on + strand, within Shewana3_0174at 207.400 kb on + strand, within Shewana3_0174at 207.408 kb on - strand, within Shewana3_0174at 207.437 kb on + strand, within Shewana3_0174at 207.445 kb on - strand, within Shewana3_0174at 207.445 kb on - strand, within Shewana3_0174at 207.445 kb on - strand, within Shewana3_0174at 207.445 kb on - strand, within Shewana3_0174at 207.445 kb on - strand, within Shewana3_0174at 207.472 kb on + strand, within Shewana3_0174at 207.482 kb on + strand, within Shewana3_0174at 207.490 kb on - strand, within Shewana3_0174at 207.611 kb on + strand, within Shewana3_0174at 207.614 kb on - strand, within Shewana3_0174at 207.626 kb on + strand, within Shewana3_0174at 207.631 kb on + strand, within Shewana3_0174at 207.639 kb on - strand, within Shewana3_0174at 207.656 kb on - strand, within Shewana3_0174at 207.667 kb on + strand, within Shewana3_0174at 207.667 kb on + strand, within Shewana3_0174at 207.667 kb on + strand, within Shewana3_0174at 207.667 kb on + strand, within Shewana3_0174at 207.667 kb on + strand, within Shewana3_0174at 207.675 kb on - strand, within Shewana3_0174at 207.675 kb on - strand, within Shewana3_0174at 207.675 kb on - strand, within Shewana3_0174at 207.675 kb on - strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.731 kb on - strand, within Shewana3_0174at 207.747 kb on + strand, within Shewana3_0174at 207.747 kb on + strand, within Shewana3_0174at 207.761 kb on - strand, within Shewana3_0174at 207.788 kb on + strand, within Shewana3_0174at 207.802 kb on + strand, within Shewana3_0174at 207.802 kb on + strand, within Shewana3_0174at 207.809 kb on + strand, within Shewana3_0174at 207.819 kb on - strand, within Shewana3_0174at 207.820 kb on + strand, within Shewana3_0174at 207.823 kb on + strand, within Shewana3_0174at 207.823 kb on + strand, within Shewana3_0174at 207.823 kb on + strand, within Shewana3_0174at 207.832 kb on + strand, within Shewana3_0174at 207.837 kb on + strand, within Shewana3_0174at 207.837 kb on + strand, within Shewana3_0174at 207.837 kb on + strand, within Shewana3_0174at 207.837 kb on + strand, within Shewana3_0174at 207.837 kb on + strand, within Shewana3_0174at 207.837 kb on + strand, within Shewana3_0174at 207.845 kb on - strand, within Shewana3_0174at 207.845 kb on - strand, within Shewana3_0174at 207.845 kb on - strand, within Shewana3_0174at 207.845 kb on - strand, within Shewana3_0174at 207.845 kb on - strand, within Shewana3_0174at 207.855 kb on - strand, within Shewana3_0174at 207.937 kb on - strand, within Shewana3_0174at 207.947 kb on - strand, within Shewana3_0174at 207.991 kb on + strand, within Shewana3_0174at 208.034 kb on - strand, within Shewana3_0174at 208.115 kb on + strand, within Shewana3_0174at 208.115 kb on + strand, within Shewana3_0174at 208.115 kb on + strand, within Shewana3_0174at 208.115 kb on + strand, within Shewana3_0174at 208.115 kb on + strand, within Shewana3_0174at 208.123 kb on - strand, within Shewana3_0174at 208.123 kb on - strand, within Shewana3_0174at 208.125 kb on + strand, within Shewana3_0174at 208.188 kb on + strand, within Shewana3_0174at 208.193 kb on + strand, within Shewana3_0174at 208.279 kb on + strand, within Shewana3_0174at 208.287 kb on - strand, within Shewana3_0174at 208.326 kb on + strand, within Shewana3_0174at 208.328 kb on + strand, within Shewana3_0174at 208.341 kb on - strandat 208.342 kb on - strandat 208.351 kb on - strandat 208.376 kb on - strandat 208.403 kb on - strandat 208.547 kb on - strandat 208.571 kb on - strandat 208.639 kb on + strand, within Shewana3_0175at 208.641 kb on - strand, within Shewana3_0175at 208.657 kb on + strand, within Shewana3_0175at 208.768 kb on + strand, within Shewana3_0175at 208.768 kb on + strand, within Shewana3_0175at 208.774 kb on - strand, within Shewana3_0175at 208.776 kb on - strand, within Shewana3_0175at 208.781 kb on + strand, within Shewana3_0175at 208.809 kb on - strand, within Shewana3_0175at 209.025 kb on - strand, within Shewana3_0175at 209.056 kb on + strand, within Shewana3_0175at 209.089 kb on - strand, within Shewana3_0175at 209.132 kb on - strand, within Shewana3_0175at 209.257 kb on - strand, within Shewana3_0175at 209.330 kb on + strand, within Shewana3_0175at 209.341 kb on - strand, within Shewana3_0175

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml
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206,163 + Shewana3_0173 0.51 -0.1
206,183 + Shewana3_0173 0.52 -0.5
206,248 + Shewana3_0173 0.55 -0.5
206,405 + Shewana3_0173 0.64 +0.3
206,476 + Shewana3_0173 0.67 -0.6
206,595 - Shewana3_0173 0.74 +1.0
206,623 + Shewana3_0173 0.75 -0.1
206,902 + -0.0
206,995 + -0.2
207,013 + -0.0
207,063 - -0.5
207,198 + +0.1
207,295 + Shewana3_0174 0.11 -0.2
207,321 + Shewana3_0174 0.13 -0.4
207,329 - Shewana3_0174 0.13 +1.0
207,380 + Shewana3_0174 0.17 -0.2
207,400 + Shewana3_0174 0.19 -1.2
207,400 + Shewana3_0174 0.19 -0.1
207,408 - Shewana3_0174 0.19 -0.2
207,437 + Shewana3_0174 0.22 +0.1
207,445 - Shewana3_0174 0.22 +0.3
207,445 - Shewana3_0174 0.22 -0.0
207,445 - Shewana3_0174 0.22 +1.0
207,445 - Shewana3_0174 0.22 -0.1
207,445 - Shewana3_0174 0.22 -0.2
207,472 + Shewana3_0174 0.24 +0.4
207,482 + Shewana3_0174 0.25 -0.9
207,490 - Shewana3_0174 0.26 -0.0
207,611 + Shewana3_0174 0.35 -0.1
207,614 - Shewana3_0174 0.35 -0.1
207,626 + Shewana3_0174 0.36 -0.4
207,631 + Shewana3_0174 0.36 +0.0
207,639 - Shewana3_0174 0.37 +0.3
207,656 - Shewana3_0174 0.38 -0.6
207,667 + Shewana3_0174 0.39 -0.1
207,667 + Shewana3_0174 0.39 -0.1
207,667 + Shewana3_0174 0.39 -0.2
207,667 + Shewana3_0174 0.39 -0.4
207,667 + Shewana3_0174 0.39 -0.5
207,675 - Shewana3_0174 0.40 -0.1
207,675 - Shewana3_0174 0.40 -0.4
207,675 - Shewana3_0174 0.40 -0.5
207,675 - Shewana3_0174 0.40 +2.3
207,721 + Shewana3_0174 0.43 -0.3
207,721 + Shewana3_0174 0.43 +0.0
207,721 + Shewana3_0174 0.43 -0.3
207,721 + Shewana3_0174 0.43 -0.5
207,721 + Shewana3_0174 0.43 -0.3
207,721 + Shewana3_0174 0.43 -0.1
207,721 + Shewana3_0174 0.43 -0.3
207,729 - Shewana3_0174 0.44 +0.4
207,729 - Shewana3_0174 0.44 -0.2
207,729 - Shewana3_0174 0.44 -0.1
207,729 - Shewana3_0174 0.44 -0.4
207,729 - Shewana3_0174 0.44 -0.4
207,729 - Shewana3_0174 0.44 -1.3
207,729 - Shewana3_0174 0.44 +0.2
207,729 - Shewana3_0174 0.44 +0.1
207,729 - Shewana3_0174 0.44 +0.2
207,729 - Shewana3_0174 0.44 +0.2
207,731 - Shewana3_0174 0.44 +0.0
207,747 + Shewana3_0174 0.45 -0.3
207,747 + Shewana3_0174 0.45 -0.6
207,761 - Shewana3_0174 0.46 -0.6
207,788 + Shewana3_0174 0.48 +0.7
207,802 + Shewana3_0174 0.49 -0.4
207,802 + Shewana3_0174 0.49 -0.1
207,809 + Shewana3_0174 0.50 -0.6
207,819 - Shewana3_0174 0.51 +1.0
207,820 + Shewana3_0174 0.51 +0.0
207,823 + Shewana3_0174 0.51 +0.1
207,823 + Shewana3_0174 0.51 -0.3
207,823 + Shewana3_0174 0.51 -0.1
207,832 + Shewana3_0174 0.52 +0.3
207,837 + Shewana3_0174 0.52 -1.6
207,837 + Shewana3_0174 0.52 -0.3
207,837 + Shewana3_0174 0.52 -0.1
207,837 + Shewana3_0174 0.52 +0.1
207,837 + Shewana3_0174 0.52 -0.2
207,837 + Shewana3_0174 0.52 -0.6
207,845 - Shewana3_0174 0.53 +0.0
207,845 - Shewana3_0174 0.53 -0.4
207,845 - Shewana3_0174 0.53 +0.6
207,845 - Shewana3_0174 0.53 +0.0
207,845 - Shewana3_0174 0.53 -0.2
207,855 - Shewana3_0174 0.54 +1.0
207,937 - Shewana3_0174 0.60 +1.0
207,947 - Shewana3_0174 0.61 -0.6
207,991 + Shewana3_0174 0.64 -0.1
208,034 - Shewana3_0174 0.67 +0.0
208,115 + Shewana3_0174 0.73 -0.7
208,115 + Shewana3_0174 0.73 -0.1
208,115 + Shewana3_0174 0.73 -0.6
208,115 + Shewana3_0174 0.73 +0.3
208,115 + Shewana3_0174 0.73 -0.2
208,123 - Shewana3_0174 0.74 -0.6
208,123 - Shewana3_0174 0.74 +1.0
208,125 + Shewana3_0174 0.74 -0.1
208,188 + Shewana3_0174 0.79 -0.2
208,193 + Shewana3_0174 0.79 -0.4
208,279 + Shewana3_0174 0.86 -0.3
208,287 - Shewana3_0174 0.86 +1.0
208,326 + Shewana3_0174 0.89 -0.1
208,328 + Shewana3_0174 0.89 -0.4
208,341 - +1.0
208,342 - +0.0
208,351 - -0.2
208,376 - +1.0
208,403 - +1.0
208,547 - +0.6
208,571 - +0.7
208,639 + Shewana3_0175 0.11 -0.3
208,641 - Shewana3_0175 0.11 -0.6
208,657 + Shewana3_0175 0.12 -0.4
208,768 + Shewana3_0175 0.22 +0.0
208,768 + Shewana3_0175 0.22 -0.6
208,774 - Shewana3_0175 0.23 +0.4
208,776 - Shewana3_0175 0.23 +0.3
208,781 + Shewana3_0175 0.23 -0.4
208,809 - Shewana3_0175 0.26 -0.7
209,025 - Shewana3_0175 0.46 -1.0
209,056 + Shewana3_0175 0.49 -0.4
209,089 - Shewana3_0175 0.52 -0.5
209,132 - Shewana3_0175 0.55 -0.5
209,257 - Shewana3_0175 0.67 -0.3
209,330 + Shewana3_0175 0.73 -0.6
209,341 - Shewana3_0175 0.74 -0.5

Or see this region's nucleotide sequence