Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0025 and Shewana3_0026 are separated by 15 nucleotides Shewana3_0026 and Shewana3_0027 are separated by 77 nucleotides Shewana3_0027 and Shewana3_0028 are separated by 1 nucleotides Shewana3_0028 and Shewana3_0029 are separated by 54 nucleotides
Shewana3_0025: Shewana3_0025 - proline dipeptidase (RefSeq), at 32,031 to 33,350
_0025
Shewana3_0026: Shewana3_0026 - hypothetical protein (RefSeq), at 33,366 to 33,980
_0026
Shewana3_0027: Shewana3_0027 - TrkH family potassium uptake protein (RefSeq), at 34,058 to 35,515
_0027
Shewana3_0028: Shewana3_0028 - protoporphyrinogen oxidase (RefSeq), at 35,517 to 36,041
_0028
Shewana3_0029: Shewana3_0029 - ArsR family transcriptional regulator (RefSeq), at 36,096 to 36,404
_0029
Position (kb) 34
35
36 Strain fitness (log2 ratio) -1
0
1 at 33.255 kb on - strand at 33.358 kb on - strand at 33.358 kb on - strand at 33.368 kb on + strand at 33.626 kb on + strand, within Shewana3_0026 at 33.632 kb on - strand, within Shewana3_0026 at 33.738 kb on + strand, within Shewana3_0026 at 33.739 kb on + strand, within Shewana3_0026 at 33.747 kb on - strand, within Shewana3_0026 at 33.948 kb on - strand at 33.985 kb on - strand at 34.249 kb on - strand, within Shewana3_0027 at 34.292 kb on + strand, within Shewana3_0027 at 34.326 kb on + strand, within Shewana3_0027 at 34.426 kb on + strand, within Shewana3_0027 at 34.631 kb on - strand, within Shewana3_0027 at 35.056 kb on + strand, within Shewana3_0027 at 35.121 kb on + strand, within Shewana3_0027 at 35.121 kb on + strand, within Shewana3_0027 at 35.129 kb on - strand, within Shewana3_0027 at 35.136 kb on + strand, within Shewana3_0027 at 35.179 kb on - strand, within Shewana3_0027 at 35.196 kb on - strand, within Shewana3_0027 at 35.196 kb on - strand, within Shewana3_0027 at 35.196 kb on - strand, within Shewana3_0027 at 35.270 kb on + strand, within Shewana3_0027 at 35.276 kb on + strand, within Shewana3_0027 at 35.276 kb on + strand, within Shewana3_0027 at 35.278 kb on - strand, within Shewana3_0027 at 35.293 kb on + strand, within Shewana3_0027 at 35.319 kb on + strand, within Shewana3_0027 at 35.366 kb on - strand, within Shewana3_0027 at 35.373 kb on + strand at 35.621 kb on - strand, within Shewana3_0028 at 35.631 kb on - strand, within Shewana3_0028 at 35.640 kb on + strand, within Shewana3_0028 at 35.640 kb on + strand, within Shewana3_0028 at 35.640 kb on + strand, within Shewana3_0028 at 35.641 kb on + strand, within Shewana3_0028 at 35.648 kb on - strand, within Shewana3_0028 at 35.649 kb on - strand, within Shewana3_0028 at 35.674 kb on - strand, within Shewana3_0028 at 35.742 kb on + strand, within Shewana3_0028 at 35.742 kb on + strand, within Shewana3_0028 at 35.750 kb on - strand, within Shewana3_0028 at 35.853 kb on - strand, within Shewana3_0028 at 35.925 kb on + strand, within Shewana3_0028 at 35.975 kb on - strand, within Shewana3_0028 at 36.060 kb on - strand at 36.060 kb on - strand at 36.078 kb on - strand at 36.092 kb on - strand at 36.115 kb on - strand at 36.159 kb on - strand, within Shewana3_0029 at 36.159 kb on - strand, within Shewana3_0029 at 36.159 kb on - strand, within Shewana3_0029 at 36.170 kb on - strand, within Shewana3_0029 at 36.170 kb on - strand, within Shewana3_0029
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 33,255 - -0.3 33,358 - -0.2 33,358 - -0.0 33,368 + +0.0 33,626 + Shewana3_0026 0.42 -0.5 33,632 - Shewana3_0026 0.43 +0.5 33,738 + Shewana3_0026 0.60 -0.4 33,739 + Shewana3_0026 0.61 -0.2 33,747 - Shewana3_0026 0.62 -0.2 33,948 - -0.4 33,985 - -0.7 34,249 - Shewana3_0027 0.13 +0.2 34,292 + Shewana3_0027 0.16 -0.5 34,326 + Shewana3_0027 0.18 +0.3 34,426 + Shewana3_0027 0.25 +0.0 34,631 - Shewana3_0027 0.39 -0.5 35,056 + Shewana3_0027 0.68 -0.4 35,121 + Shewana3_0027 0.73 -0.1 35,121 + Shewana3_0027 0.73 +1.0 35,129 - Shewana3_0027 0.73 +0.5 35,136 + Shewana3_0027 0.74 +0.2 35,179 - Shewana3_0027 0.77 -0.2 35,196 - Shewana3_0027 0.78 +1.0 35,196 - Shewana3_0027 0.78 +0.0 35,196 - Shewana3_0027 0.78 +1.0 35,270 + Shewana3_0027 0.83 -0.0 35,276 + Shewana3_0027 0.84 +0.0 35,276 + Shewana3_0027 0.84 -1.3 35,278 - Shewana3_0027 0.84 +1.0 35,293 + Shewana3_0027 0.85 -0.9 35,319 + Shewana3_0027 0.86 -0.8 35,366 - Shewana3_0027 0.90 +0.0 35,373 + -0.7 35,621 - Shewana3_0028 0.20 -0.5 35,631 - Shewana3_0028 0.22 -0.3 35,640 + Shewana3_0028 0.23 -0.3 35,640 + Shewana3_0028 0.23 -0.3 35,640 + Shewana3_0028 0.23 -0.3 35,641 + Shewana3_0028 0.24 -0.2 35,648 - Shewana3_0028 0.25 +1.6 35,649 - Shewana3_0028 0.25 +0.3 35,674 - Shewana3_0028 0.30 -0.1 35,742 + Shewana3_0028 0.43 -0.3 35,742 + Shewana3_0028 0.43 -0.1 35,750 - Shewana3_0028 0.44 -0.3 35,853 - Shewana3_0028 0.64 -0.2 35,925 + Shewana3_0028 0.78 -0.8 35,975 - Shewana3_0028 0.87 -0.4 36,060 - -0.2 36,060 - +0.5 36,078 - -0.2 36,092 - -0.3 36,115 - +0.0 36,159 - Shewana3_0029 0.20 -0.2 36,159 - Shewana3_0029 0.20 -0.2 36,159 - Shewana3_0029 0.20 -0.4 36,170 - Shewana3_0029 0.24 -0.4 36,170 - Shewana3_0029 0.24 -0.4
Or see this region's nucleotide sequence