Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4355 and Shewana3_4356 are separated by 200 nucleotides Shewana3_4356 and Shewana3_4357 are separated by 9 nucleotides Shewana3_4357 and Shewana3_4358 are separated by 857 nucleotides
Shewana3_4355: Shewana3_4355 - hypothetical protein (RefSeq), at 240,677 to 241,708
_4355
Shewana3_4356: Shewana3_4356 - XRE family transcriptional regulator (RefSeq), at 241,909 to 242,253
_4356
Shewana3_4357: Shewana3_4357 - hypothetical protein (RefSeq), at 242,263 to 243,072
_4357
Shewana3_4358: Shewana3_4358 - phage integrase family protein (RefSeq), at 243,930 to 244,595
_4358
Position (kb) 242
243
244 Strain fitness (log2 ratio) -1
0
1 at 241.379 kb on - strand, within Shewana3_4355 at 241.485 kb on + strand, within Shewana3_4355 at 241.493 kb on - strand, within Shewana3_4355 at 241.494 kb on + strand, within Shewana3_4355 at 241.617 kb on - strand at 241.621 kb on - strand at 241.629 kb on - strand at 241.643 kb on + strand at 241.644 kb on + strand at 241.652 kb on - strand at 241.774 kb on + strand at 241.774 kb on + strand at 241.782 kb on - strand at 241.786 kb on + strand at 241.986 kb on + strand, within Shewana3_4356 at 241.986 kb on + strand, within Shewana3_4356 at 242.044 kb on + strand, within Shewana3_4356 at 242.107 kb on - strand, within Shewana3_4356 at 242.423 kb on - strand, within Shewana3_4357 at 242.509 kb on + strand, within Shewana3_4357 at 242.518 kb on + strand, within Shewana3_4357 at 242.617 kb on + strand, within Shewana3_4357 at 242.638 kb on - strand, within Shewana3_4357 at 242.658 kb on + strand, within Shewana3_4357 at 242.786 kb on - strand, within Shewana3_4357 at 242.945 kb on + strand, within Shewana3_4357 at 243.462 kb on - strand at 243.495 kb on + strand at 243.695 kb on + strand at 243.890 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 241,379 - Shewana3_4355 0.68 +0.3 241,485 + Shewana3_4355 0.78 -0.7 241,493 - Shewana3_4355 0.79 -0.4 241,494 + Shewana3_4355 0.79 +0.3 241,617 - +0.0 241,621 - -0.4 241,629 - -0.1 241,643 + -0.1 241,644 + +0.9 241,652 - -0.2 241,774 + +0.7 241,774 + -0.7 241,782 - -0.1 241,786 + -0.0 241,986 + Shewana3_4356 0.22 -0.3 241,986 + Shewana3_4356 0.22 -0.0 242,044 + Shewana3_4356 0.39 -0.3 242,107 - Shewana3_4356 0.57 +0.9 242,423 - Shewana3_4357 0.20 +0.9 242,509 + Shewana3_4357 0.30 -0.9 242,518 + Shewana3_4357 0.31 -0.1 242,617 + Shewana3_4357 0.44 -0.9 242,638 - Shewana3_4357 0.46 +0.9 242,658 + Shewana3_4357 0.49 -1.3 242,786 - Shewana3_4357 0.65 -0.7 242,945 + Shewana3_4357 0.84 +0.9 243,462 - -0.1 243,495 + +1.1 243,695 + -0.1 243,890 + +0.4
Or see this region's nucleotide sequence