Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4316 and Shewana3_4317 are separated by 204 nucleotides Shewana3_4317 and Shewana3_4318 are separated by 113 nucleotides
Shewana3_4316: Shewana3_4316 - phage integrase family protein (RefSeq), at 203,946 to 204,968
_4316
Shewana3_4317: Shewana3_4317 - chromosome segregation ATPases-like protein (RefSeq), at 205,173 to 206,222
_4317
Shewana3_4318: Shewana3_4318 - transposase Tn3 family protein (RefSeq), at 206,336 to 209,230
_4318
Position (kb) 205
206
207 Strain fitness (log2 ratio) -1
0
1 at 204.252 kb on - strand, within Shewana3_4316 at 204.257 kb on + strand, within Shewana3_4316 at 204.328 kb on + strand, within Shewana3_4316 at 204.440 kb on - strand, within Shewana3_4316 at 204.672 kb on - strand, within Shewana3_4316 at 204.677 kb on - strand, within Shewana3_4316 at 204.711 kb on + strand, within Shewana3_4316 at 204.716 kb on + strand, within Shewana3_4316 at 204.716 kb on + strand, within Shewana3_4316 at 204.724 kb on + strand, within Shewana3_4316 at 204.842 kb on - strand, within Shewana3_4316 at 205.237 kb on + strand at 205.269 kb on + strand at 205.277 kb on - strand at 205.379 kb on + strand, within Shewana3_4317 at 205.521 kb on + strand, within Shewana3_4317 at 205.521 kb on - strand, within Shewana3_4317 at 205.569 kb on + strand, within Shewana3_4317 at 205.569 kb on + strand, within Shewana3_4317 at 205.709 kb on + strand, within Shewana3_4317 at 205.828 kb on - strand, within Shewana3_4317 at 205.831 kb on + strand, within Shewana3_4317 at 205.848 kb on - strand, within Shewana3_4317 at 205.906 kb on - strand, within Shewana3_4317 at 205.916 kb on - strand, within Shewana3_4317 at 205.952 kb on + strand, within Shewana3_4317 at 206.032 kb on - strand, within Shewana3_4317 at 206.134 kb on - strand at 206.404 kb on + strand at 206.562 kb on - strand at 206.562 kb on - strand at 206.631 kb on + strand, within Shewana3_4318 at 206.636 kb on + strand, within Shewana3_4318 at 206.644 kb on - strand, within Shewana3_4318 at 206.658 kb on + strand, within Shewana3_4318 at 206.659 kb on - strand, within Shewana3_4318 at 206.707 kb on - strand, within Shewana3_4318 at 206.954 kb on - strand, within Shewana3_4318 at 207.013 kb on - strand, within Shewana3_4318 at 207.048 kb on + strand, within Shewana3_4318 at 207.160 kb on + strand, within Shewana3_4318
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 204,252 - Shewana3_4316 0.30 +0.0 204,257 + Shewana3_4316 0.30 -0.1 204,328 + Shewana3_4316 0.37 -0.1 204,440 - Shewana3_4316 0.48 +0.2 204,672 - Shewana3_4316 0.71 -0.2 204,677 - Shewana3_4316 0.71 +0.1 204,711 + Shewana3_4316 0.75 +0.0 204,716 + Shewana3_4316 0.75 -0.1 204,716 + Shewana3_4316 0.75 -0.5 204,724 + Shewana3_4316 0.76 +0.5 204,842 - Shewana3_4316 0.88 +0.2 205,237 + -0.6 205,269 + +0.1 205,277 - +0.4 205,379 + Shewana3_4317 0.20 -1.2 205,521 + Shewana3_4317 0.33 -0.1 205,521 - Shewana3_4317 0.33 -0.8 205,569 + Shewana3_4317 0.38 -0.5 205,569 + Shewana3_4317 0.38 -0.1 205,709 + Shewana3_4317 0.51 -1.5 205,828 - Shewana3_4317 0.62 -0.0 205,831 + Shewana3_4317 0.63 -0.2 205,848 - Shewana3_4317 0.64 -0.5 205,906 - Shewana3_4317 0.70 -0.7 205,916 - Shewana3_4317 0.71 +0.9 205,952 + Shewana3_4317 0.74 -1.4 206,032 - Shewana3_4317 0.82 +0.9 206,134 - +1.6 206,404 + +0.1 206,562 - -0.2 206,562 - -0.3 206,631 + Shewana3_4318 0.10 -0.0 206,636 + Shewana3_4318 0.10 +0.2 206,644 - Shewana3_4318 0.11 -0.2 206,658 + Shewana3_4318 0.11 -0.4 206,659 - Shewana3_4318 0.11 +0.0 206,707 - Shewana3_4318 0.13 +0.3 206,954 - Shewana3_4318 0.21 -0.2 207,013 - Shewana3_4318 0.23 -0.2 207,048 + Shewana3_4318 0.25 -0.1 207,160 + Shewana3_4318 0.28 -0.5
Or see this region's nucleotide sequence