Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4288 and Shewana3_4289 are separated by 115 nucleotides Shewana3_4289 and Shewana3_4290 are separated by 14 nucleotides Shewana3_4290 and Shewana3_4291 are separated by 75 nucleotides Shewana3_4291 and Shewana3_4292 are separated by 188 nucleotides
Shewana3_4288: Shewana3_4288 - copper resistance B precursor (RefSeq), at 172,099 to 172,812
_4288
Shewana3_4289: Shewana3_4289 - copper resistance protein CopC (RefSeq), at 172,928 to 173,350
_4289
Shewana3_4290: Shewana3_4290 - copper resistance D domain-containing protein (RefSeq), at 173,365 to 174,261
_4290
Shewana3_4291: Shewana3_4291 - putative orphan protein (RefSeq), at 174,337 to 174,780
_4291
Shewana3_4292: Shewana3_4292 - hypothetical protein (RefSeq), at 174,969 to 175,514
_4292
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 172.515 kb on - strand, within Shewana3_4288 at 172.515 kb on - strand, within Shewana3_4288 at 172.620 kb on + strand, within Shewana3_4288 at 172.652 kb on + strand, within Shewana3_4288 at 172.696 kb on - strand, within Shewana3_4288 at 172.832 kb on + strand at 172.832 kb on + strand at 172.832 kb on + strand at 172.840 kb on - strand at 172.840 kb on - strand at 172.966 kb on + strand at 173.007 kb on + strand, within Shewana3_4289 at 173.007 kb on + strand, within Shewana3_4289 at 173.007 kb on + strand, within Shewana3_4289 at 173.010 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.060 kb on - strand, within Shewana3_4289 at 173.072 kb on + strand, within Shewana3_4289 at 173.122 kb on - strand, within Shewana3_4289 at 173.191 kb on - strand, within Shewana3_4289 at 173.279 kb on + strand, within Shewana3_4289 at 173.327 kb on + strand at 173.417 kb on + strand at 173.463 kb on + strand, within Shewana3_4290 at 173.570 kb on - strand, within Shewana3_4290 at 173.675 kb on + strand, within Shewana3_4290 at 173.763 kb on + strand, within Shewana3_4290 at 173.833 kb on - strand, within Shewana3_4290 at 173.870 kb on - strand, within Shewana3_4290 at 173.976 kb on + strand, within Shewana3_4290 at 173.995 kb on + strand, within Shewana3_4290 at 174.022 kb on + strand, within Shewana3_4290 at 174.030 kb on - strand, within Shewana3_4290 at 174.064 kb on - strand, within Shewana3_4290 at 174.092 kb on + strand, within Shewana3_4290 at 174.141 kb on + strand, within Shewana3_4290 at 174.208 kb on - strand at 174.331 kb on + strand at 174.344 kb on - strand at 174.346 kb on + strand at 174.346 kb on + strand at 174.346 kb on + strand at 174.354 kb on - strand at 174.429 kb on + strand, within Shewana3_4291 at 174.485 kb on - strand, within Shewana3_4291 at 174.540 kb on - strand, within Shewana3_4291 at 174.577 kb on + strand, within Shewana3_4291 at 174.595 kb on + strand, within Shewana3_4291 at 174.595 kb on + strand, within Shewana3_4291 at 174.603 kb on - strand, within Shewana3_4291 at 174.603 kb on - strand, within Shewana3_4291 at 174.665 kb on + strand, within Shewana3_4291 at 174.681 kb on + strand, within Shewana3_4291 at 174.703 kb on - strand, within Shewana3_4291 at 174.719 kb on + strand, within Shewana3_4291 at 174.719 kb on + strand, within Shewana3_4291 at 174.727 kb on - strand, within Shewana3_4291 at 174.781 kb on - strand at 174.858 kb on + strand at 174.876 kb on - strand at 174.931 kb on + strand at 174.985 kb on - strand at 175.005 kb on - strand at 175.025 kb on - strand, within Shewana3_4292 at 175.025 kb on - strand, within Shewana3_4292 at 175.027 kb on + strand, within Shewana3_4292 at 175.115 kb on + strand, within Shewana3_4292 at 175.161 kb on - strand, within Shewana3_4292 at 175.168 kb on + strand at 175.212 kb on + strand, within Shewana3_4292 at 175.230 kb on - strand, within Shewana3_4292 at 175.252 kb on + strand, within Shewana3_4292 at 175.252 kb on + strand, within Shewana3_4292 at 175.252 kb on + strand, within Shewana3_4292 at 175.252 kb on + strand, within Shewana3_4292 at 175.260 kb on - strand, within Shewana3_4292
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 172,515 - Shewana3_4288 0.58 -0.3 172,515 - Shewana3_4288 0.58 -0.3 172,620 + Shewana3_4288 0.73 -0.3 172,652 + Shewana3_4288 0.77 -0.2 172,696 - Shewana3_4288 0.84 +0.0 172,832 + -0.7 172,832 + +0.5 172,832 + +0.0 172,840 - +0.9 172,840 - +0.9 172,966 + +0.0 173,007 + Shewana3_4289 0.19 +0.0 173,007 + Shewana3_4289 0.19 +0.1 173,007 + Shewana3_4289 0.19 -1.5 173,010 - Shewana3_4289 0.19 +0.9 173,015 - Shewana3_4289 0.21 -0.7 173,015 - Shewana3_4289 0.21 +0.9 173,015 - Shewana3_4289 0.21 -0.7 173,060 - Shewana3_4289 0.31 +0.9 173,072 + Shewana3_4289 0.34 +0.0 173,122 - Shewana3_4289 0.46 +0.9 173,191 - Shewana3_4289 0.62 +0.9 173,279 + Shewana3_4289 0.83 -0.4 173,327 + -0.1 173,417 + -0.1 173,463 + Shewana3_4290 0.11 -0.8 173,570 - Shewana3_4290 0.23 +2.9 173,675 + Shewana3_4290 0.35 -1.2 173,763 + Shewana3_4290 0.44 -0.7 173,833 - Shewana3_4290 0.52 +0.9 173,870 - Shewana3_4290 0.56 +0.9 173,976 + Shewana3_4290 0.68 -0.7 173,995 + Shewana3_4290 0.70 -0.8 174,022 + Shewana3_4290 0.73 -2.0 174,030 - Shewana3_4290 0.74 +0.9 174,064 - Shewana3_4290 0.78 -1.1 174,092 + Shewana3_4290 0.81 -0.0 174,141 + Shewana3_4290 0.87 -1.1 174,208 - +0.9 174,331 + -0.4 174,344 - +0.9 174,346 + -0.4 174,346 + -0.6 174,346 + -0.5 174,354 - -0.1 174,429 + Shewana3_4291 0.21 +0.2 174,485 - Shewana3_4291 0.33 -0.1 174,540 - Shewana3_4291 0.46 -0.5 174,577 + Shewana3_4291 0.54 -0.2 174,595 + Shewana3_4291 0.58 -0.1 174,595 + Shewana3_4291 0.58 +0.4 174,603 - Shewana3_4291 0.60 +0.9 174,603 - Shewana3_4291 0.60 +0.9 174,665 + Shewana3_4291 0.74 -0.1 174,681 + Shewana3_4291 0.77 -0.3 174,703 - Shewana3_4291 0.82 +1.2 174,719 + Shewana3_4291 0.86 +0.4 174,719 + Shewana3_4291 0.86 -0.0 174,727 - Shewana3_4291 0.88 +0.3 174,781 - +0.9 174,858 + +1.0 174,876 - -0.7 174,931 + +0.9 174,985 - +0.1 175,005 - +0.3 175,025 - Shewana3_4292 0.10 -0.1 175,025 - Shewana3_4292 0.10 -0.3 175,027 + Shewana3_4292 0.11 +0.9 175,115 + Shewana3_4292 0.27 +2.1 175,161 - Shewana3_4292 0.35 -0.6 175,168 + +0.9 175,212 + Shewana3_4292 0.45 -0.7 175,230 - Shewana3_4292 0.48 +0.2 175,252 + Shewana3_4292 0.52 -0.7 175,252 + Shewana3_4292 0.52 -0.1 175,252 + Shewana3_4292 0.52 -1.1 175,252 + Shewana3_4292 0.52 +0.9 175,260 - Shewana3_4292 0.53 -0.2
Or see this region's nucleotide sequence