Experiment: MoYLS4 with Nitrite 0.125mg/mL + Zinc Sulfate 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0619 and DVU0620 are separated by 115 nucleotides DVU0620 and DVU0621 are separated by 286 nucleotides DVU0621 and DVU0622 are separated by 138 nucleotides
DVU0619: DVU0619 - sigma-54 dependent transcriptional regulator (TIGR), at 684,470 to 685,909
DVU0619
DVU0620: DVU0620 - endoribonuclease, L-PSP family (TIGR), at 686,025 to 686,408
DVU0620
DVU0621: DVU0621 - sigma-54 dependent DNA-binding response regulator (TIGR), at 686,695 to 688,092
DVU0621
DVU0622: DVU0622 - sensor histidine kinase/response regulator (TIGR), at 688,231 to 690,729
DVU0622
Position (kb) 686
687
688
689 Strain fitness (log2 ratio) -2
-1
0
1 at 685.695 kb on - strand, within DVU0619 at 685.695 kb on - strand, within DVU0619 at 685.695 kb on - strand, within DVU0619 at 685.702 kb on - strand, within DVU0619 at 685.737 kb on + strand, within DVU0619 at 685.747 kb on + strand, within DVU0619 at 685.861 kb on - strand at 685.888 kb on - strand at 685.924 kb on - strand at 685.924 kb on - strand at 686.011 kb on - strand at 686.033 kb on + strand at 686.083 kb on - strand, within DVU0620 at 686.245 kb on - strand, within DVU0620 at 686.258 kb on + strand, within DVU0620 at 686.379 kb on - strand at 686.401 kb on + strand at 686.409 kb on + strand at 686.547 kb on + strand at 686.565 kb on - strand at 686.610 kb on - strand at 686.633 kb on + strand at 686.853 kb on + strand, within DVU0621 at 686.861 kb on - strand, within DVU0621 at 686.863 kb on - strand, within DVU0621 at 686.964 kb on + strand, within DVU0621 at 687.106 kb on + strand, within DVU0621 at 687.119 kb on - strand, within DVU0621 at 687.158 kb on + strand, within DVU0621 at 687.191 kb on - strand, within DVU0621 at 687.191 kb on - strand, within DVU0621 at 687.204 kb on + strand, within DVU0621 at 687.208 kb on + strand, within DVU0621 at 687.229 kb on - strand, within DVU0621 at 687.339 kb on - strand, within DVU0621 at 687.350 kb on + strand, within DVU0621 at 687.394 kb on + strand, within DVU0621 at 687.426 kb on + strand, within DVU0621 at 687.454 kb on - strand, within DVU0621 at 687.469 kb on - strand, within DVU0621 at 687.486 kb on - strand, within DVU0621 at 687.524 kb on - strand, within DVU0621 at 687.551 kb on + strand, within DVU0621 at 687.602 kb on + strand, within DVU0621 at 687.605 kb on + strand, within DVU0621 at 687.661 kb on + strand, within DVU0621 at 687.666 kb on + strand, within DVU0621 at 687.666 kb on + strand, within DVU0621 at 687.666 kb on + strand, within DVU0621 at 687.666 kb on + strand, within DVU0621 at 687.666 kb on + strand, within DVU0621 at 687.666 kb on + strand, within DVU0621 at 687.674 kb on - strand, within DVU0621 at 687.674 kb on - strand, within DVU0621 at 687.755 kb on - strand, within DVU0621 at 687.802 kb on + strand, within DVU0621 at 687.802 kb on + strand, within DVU0621 at 687.802 kb on + strand, within DVU0621 at 687.802 kb on + strand, within DVU0621 at 687.804 kb on + strand, within DVU0621 at 687.847 kb on + strand, within DVU0621 at 687.855 kb on - strand, within DVU0621 at 687.931 kb on + strand, within DVU0621 at 687.939 kb on - strand, within DVU0621 at 687.962 kb on - strand at 688.011 kb on + strand at 688.148 kb on - strand at 688.210 kb on - strand at 688.212 kb on + strand at 688.220 kb on - strand at 688.250 kb on + strand at 688.281 kb on - strand at 688.295 kb on + strand at 688.410 kb on + strand at 688.410 kb on + strand at 688.464 kb on + strand at 688.517 kb on + strand, within DVU0622 at 688.528 kb on - strand, within DVU0622 at 688.528 kb on - strand, within DVU0622 at 688.603 kb on + strand, within DVU0622 at 688.622 kb on + strand, within DVU0622 at 688.622 kb on + strand, within DVU0622 at 688.622 kb on + strand, within DVU0622 at 688.623 kb on - strand, within DVU0622 at 688.630 kb on - strand, within DVU0622 at 688.657 kb on - strand, within DVU0622 at 688.670 kb on + strand, within DVU0622 at 688.698 kb on + strand, within DVU0622 at 688.784 kb on + strand, within DVU0622 at 688.888 kb on + strand, within DVU0622 at 688.974 kb on + strand, within DVU0622 at 689.016 kb on + strand, within DVU0622 at 689.016 kb on + strand, within DVU0622 at 689.016 kb on + strand, within DVU0622 at 689.016 kb on + strand, within DVU0622 at 689.016 kb on + strand, within DVU0622 at 689.024 kb on - strand, within DVU0622 at 689.024 kb on - strand, within DVU0622 at 689.052 kb on - strand, within DVU0622
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.125mg/mL + Zinc Sulfate 0.1mM remove 685,695 - DVU0619 0.85 -0.2 685,695 - DVU0619 0.85 -0.7 685,695 - DVU0619 0.85 -0.3 685,702 - DVU0619 0.86 -0.6 685,737 + DVU0619 0.88 -0.6 685,747 + DVU0619 0.89 -0.1 685,861 - +0.1 685,888 - -0.1 685,924 - -0.3 685,924 - +1.0 686,011 - +0.1 686,033 + -0.4 686,083 - DVU0620 0.15 +0.0 686,245 - DVU0620 0.57 -0.5 686,258 + DVU0620 0.61 -0.2 686,379 - -0.3 686,401 + +0.1 686,409 + +0.0 686,547 + -0.5 686,565 - +0.3 686,610 - -0.3 686,633 + -0.8 686,853 + DVU0621 0.11 -0.0 686,861 - DVU0621 0.12 +1.2 686,863 - DVU0621 0.12 +0.0 686,964 + DVU0621 0.19 -0.5 687,106 + DVU0621 0.29 -0.8 687,119 - DVU0621 0.30 +1.4 687,158 + DVU0621 0.33 -0.3 687,191 - DVU0621 0.35 -0.5 687,191 - DVU0621 0.35 -0.1 687,204 + DVU0621 0.36 -0.0 687,208 + DVU0621 0.37 -0.7 687,229 - DVU0621 0.38 -0.2 687,339 - DVU0621 0.46 -0.2 687,350 + DVU0621 0.47 +0.1 687,394 + DVU0621 0.50 -0.6 687,426 + DVU0621 0.52 +0.3 687,454 - DVU0621 0.54 -0.1 687,469 - DVU0621 0.55 -0.5 687,486 - DVU0621 0.57 +1.3 687,524 - DVU0621 0.59 -0.3 687,551 + DVU0621 0.61 +0.7 687,602 + DVU0621 0.65 -0.3 687,605 + DVU0621 0.65 -0.4 687,661 + DVU0621 0.69 -0.2 687,666 + DVU0621 0.69 -0.2 687,666 + DVU0621 0.69 -0.6 687,666 + DVU0621 0.69 -0.5 687,666 + DVU0621 0.69 -1.3 687,666 + DVU0621 0.69 -0.4 687,666 + DVU0621 0.69 -0.3 687,674 - DVU0621 0.70 -0.1 687,674 - DVU0621 0.70 -0.2 687,755 - DVU0621 0.76 -1.6 687,802 + DVU0621 0.79 +0.3 687,802 + DVU0621 0.79 -0.5 687,802 + DVU0621 0.79 -0.3 687,802 + DVU0621 0.79 -0.1 687,804 + DVU0621 0.79 -0.5 687,847 + DVU0621 0.82 -0.9 687,855 - DVU0621 0.83 -1.2 687,931 + DVU0621 0.88 -0.3 687,939 - DVU0621 0.89 -1.7 687,962 - -0.7 688,011 + -0.2 688,148 - -0.3 688,210 - -0.0 688,212 + -0.4 688,220 - +0.0 688,250 + +0.8 688,281 - +0.5 688,295 + +0.0 688,410 + +0.4 688,410 + -0.3 688,464 + -1.7 688,517 + DVU0622 0.11 -2.1 688,528 - DVU0622 0.12 -1.2 688,528 - DVU0622 0.12 -0.4 688,603 + DVU0622 0.15 -0.3 688,622 + DVU0622 0.16 -0.7 688,622 + DVU0622 0.16 -0.3 688,622 + DVU0622 0.16 +0.8 688,623 - DVU0622 0.16 -0.2 688,630 - DVU0622 0.16 +0.8 688,657 - DVU0622 0.17 -0.5 688,670 + DVU0622 0.18 -0.3 688,698 + DVU0622 0.19 -0.5 688,784 + DVU0622 0.22 -0.4 688,888 + DVU0622 0.26 -0.1 688,974 + DVU0622 0.30 -0.4 689,016 + DVU0622 0.31 +0.4 689,016 + DVU0622 0.31 -0.4 689,016 + DVU0622 0.31 -0.1 689,016 + DVU0622 0.31 +0.2 689,016 + DVU0622 0.31 -1.5 689,024 - DVU0622 0.32 -0.4 689,024 - DVU0622 0.32 -0.3 689,052 - DVU0622 0.33 -0.2
Or see this region's nucleotide sequence