Experiment: L-Arginine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4831 and Pf1N1B4_4832 are separated by 562 nucleotides Pf1N1B4_4832 and Pf1N1B4_4833 are separated by 7 nucleotides Pf1N1B4_4833 and Pf1N1B4_4834 are separated by 33 nucleotides
Pf1N1B4_4831 - Outer membrane protein assembly factor YaeT precursor, at 5,335,426 to 5,336,895
_4831
Pf1N1B4_4832 - hypothetical protein, at 5,337,458 to 5,337,664
_4832
Pf1N1B4_4833 - DNA-binding response regulator, LuxR family, at 5,337,672 to 5,338,304
_4833
Pf1N1B4_4834 - Sensor histidine kinase, at 5,338,338 to 5,339,699
_4834
Position (kb) 5337
5338
5339 Strain fitness (log2 ratio) -2
-1
0
1 at 5336.963 kb on + strand at 5337.036 kb on + strand at 5337.172 kb on + strand at 5337.382 kb on + strand at 5337.497 kb on + strand, within Pf1N1B4_4832 at 5337.497 kb on + strand, within Pf1N1B4_4832 at 5337.498 kb on - strand, within Pf1N1B4_4832 at 5337.498 kb on - strand, within Pf1N1B4_4832 at 5337.501 kb on + strand, within Pf1N1B4_4832 at 5337.501 kb on + strand, within Pf1N1B4_4832 at 5337.501 kb on + strand, within Pf1N1B4_4832 at 5337.501 kb on + strand, within Pf1N1B4_4832 at 5337.502 kb on - strand, within Pf1N1B4_4832 at 5337.502 kb on - strand, within Pf1N1B4_4832 at 5337.502 kb on - strand, within Pf1N1B4_4832 at 5337.505 kb on + strand, within Pf1N1B4_4832 at 5337.508 kb on + strand, within Pf1N1B4_4832 at 5337.508 kb on + strand, within Pf1N1B4_4832 at 5337.532 kb on + strand at 5337.625 kb on + strand, within Pf1N1B4_4832 at 5337.768 kb on + strand at 5337.916 kb on + strand, within Pf1N1B4_4833 at 5337.916 kb on + strand, within Pf1N1B4_4833 at 5337.988 kb on + strand, within Pf1N1B4_4833 at 5338.025 kb on - strand, within Pf1N1B4_4833 at 5338.030 kb on + strand, within Pf1N1B4_4833 at 5338.030 kb on + strand, within Pf1N1B4_4833 at 5338.831 kb on - strand, within Pf1N1B4_4834 at 5339.164 kb on + strand, within Pf1N1B4_4834 at 5339.164 kb on + strand, within Pf1N1B4_4834 at 5339.164 kb on + strand, within Pf1N1B4_4834 at 5339.212 kb on + strand, within Pf1N1B4_4834 at 5339.213 kb on - strand, within Pf1N1B4_4834 at 5339.213 kb on - strand, within Pf1N1B4_4834 at 5339.213 kb on - strand, within Pf1N1B4_4834 at 5339.213 kb on - strand at 5339.213 kb on - strand, within Pf1N1B4_4834
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (C) remove 5,336,963 + +0.1 5,337,036 + -0.3 5,337,172 + -1.3 5,337,382 + +0.7 5,337,497 + Pf1N1B4_4832 0.19 +1.7 5,337,497 + Pf1N1B4_4832 0.19 +1.3 5,337,498 - Pf1N1B4_4832 0.19 -0.6 5,337,498 - Pf1N1B4_4832 0.19 +0.0 5,337,501 + Pf1N1B4_4832 0.21 -1.3 5,337,501 + Pf1N1B4_4832 0.21 -0.2 5,337,501 + Pf1N1B4_4832 0.21 +0.7 5,337,501 + Pf1N1B4_4832 0.21 +1.3 5,337,502 - Pf1N1B4_4832 0.21 -1.0 5,337,502 - Pf1N1B4_4832 0.21 +1.0 5,337,502 - Pf1N1B4_4832 0.21 -0.6 5,337,505 + Pf1N1B4_4832 0.23 -1.0 5,337,508 + Pf1N1B4_4832 0.24 -0.3 5,337,508 + Pf1N1B4_4832 0.24 -0.9 5,337,532 + -1.3 5,337,625 + Pf1N1B4_4832 0.81 -1.9 5,337,768 + +0.7 5,337,916 + Pf1N1B4_4833 0.39 -1.9 5,337,916 + Pf1N1B4_4833 0.39 +0.5 5,337,988 + Pf1N1B4_4833 0.50 -0.9 5,338,025 - Pf1N1B4_4833 0.56 -1.7 5,338,030 + Pf1N1B4_4833 0.57 -1.1 5,338,030 + Pf1N1B4_4833 0.57 -0.3 5,338,831 - Pf1N1B4_4834 0.36 -1.9 5,339,164 + Pf1N1B4_4834 0.61 -0.7 5,339,164 + Pf1N1B4_4834 0.61 -0.7 5,339,164 + Pf1N1B4_4834 0.61 -0.0 5,339,212 + Pf1N1B4_4834 0.64 -0.3 5,339,213 - Pf1N1B4_4834 0.64 -1.9 5,339,213 - Pf1N1B4_4834 0.64 +1.7 5,339,213 - Pf1N1B4_4834 0.64 -1.9 5,339,213 - +1.3 5,339,213 - Pf1N1B4_4834 0.64 -1.9
Or see this region's nucleotide sequence