Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4590

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4589 and Pf1N1B4_4590 are separated by 183 nucleotidesPf1N1B4_4590 and Pf1N1B4_4591 are separated by 1 nucleotides Pf1N1B4_4589 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 5,059,468 to 5,060,265 _4589 Pf1N1B4_4590 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 5,060,449 to 5,061,900 _4590 Pf1N1B4_4591 - Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1), at 5,061,902 to 5,062,921 _4591 Position (kb) 5060 5061 5062Strain fitness (log2 ratio) -2 -1 0 1 2at 5060.338 kb on - strandat 5060.500 kb on - strandat 5060.500 kb on - strandat 5060.584 kb on - strandat 5060.669 kb on - strand, within Pf1N1B4_4590at 5060.669 kb on - strandat 5061.007 kb on - strand, within Pf1N1B4_4590at 5061.239 kb on - strand, within Pf1N1B4_4590at 5061.239 kb on - strand, within Pf1N1B4_4590at 5061.293 kb on - strand, within Pf1N1B4_4590at 5061.681 kb on - strand, within Pf1N1B4_4590at 5061.681 kb on - strand, within Pf1N1B4_4590at 5062.221 kb on + strand, within Pf1N1B4_4591at 5062.603 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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5,060,338 - -1.0
5,060,500 - +0.3
5,060,500 - +0.5
5,060,584 - -0.3
5,060,669 - Pf1N1B4_4590 0.15 -0.3
5,060,669 - +0.7
5,061,007 - Pf1N1B4_4590 0.38 +2.1
5,061,239 - Pf1N1B4_4590 0.54 +0.0
5,061,239 - Pf1N1B4_4590 0.54 -1.3
5,061,293 - Pf1N1B4_4590 0.58 +0.1
5,061,681 - Pf1N1B4_4590 0.85 +0.6
5,061,681 - Pf1N1B4_4590 0.85 +1.3
5,062,221 + Pf1N1B4_4591 0.31 +0.1
5,062,603 - -2.3

Or see this region's nucleotide sequence