Experiment: L-Arginine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4304 and Pf1N1B4_4305 are separated by 37 nucleotides Pf1N1B4_4305 and Pf1N1B4_4306 are separated by 145 nucleotides Pf1N1B4_4306 and Pf1N1B4_4307 are separated by 153 nucleotides Pf1N1B4_4307 and Pf1N1B4_4308 are separated by 13 nucleotides Pf1N1B4_4308 and Pf1N1B4_4309 are separated by 273 nucleotides
Pf1N1B4_4304 - hypothetical protein, at 4,767,302 to 4,767,574
_4304
Pf1N1B4_4305 - PUTATIVE METHYLTRANSFERASE, at 4,767,612 to 4,768,424
_4305
Pf1N1B4_4306 - Universal stress protein family 5, at 4,768,570 to 4,769,496
_4306
Pf1N1B4_4307 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 4,769,650 to 4,770,039
_4307
Pf1N1B4_4308 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 4,770,053 to 4,770,202
_4308
Pf1N1B4_4309 - Translation elongation factor Tu, at 4,770,476 to 4,771,393
_4309
Position (kb)
4768
4769
4770 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4767.618 kb on - strand at 4767.692 kb on + strand at 4767.700 kb on + strand, within Pf1N1B4_4305 at 4767.700 kb on + strand, within Pf1N1B4_4305 at 4767.701 kb on - strand, within Pf1N1B4_4305 at 4767.701 kb on - strand, within Pf1N1B4_4305 at 4767.834 kb on + strand, within Pf1N1B4_4305 at 4767.834 kb on + strand, within Pf1N1B4_4305 at 4768.266 kb on + strand, within Pf1N1B4_4305 at 4768.435 kb on + strand at 4768.435 kb on + strand at 4768.435 kb on + strand at 4768.435 kb on + strand at 4768.435 kb on + strand at 4768.435 kb on + strand at 4768.435 kb on + strand at 4768.435 kb on + strand at 4768.435 kb on + strand at 4768.436 kb on - strand at 4768.436 kb on - strand at 4768.436 kb on - strand at 4768.436 kb on - strand at 4768.436 kb on - strand at 4768.436 kb on - strand at 4768.436 kb on - strand at 4768.436 kb on - strand at 4768.436 kb on - strand at 4768.436 kb on - strand at 4768.436 kb on - strand at 4768.436 kb on - strand at 4768.436 kb on - strand at 4768.592 kb on + strand at 4768.593 kb on - strand at 4768.706 kb on + strand, within Pf1N1B4_4306 at 4768.707 kb on - strand, within Pf1N1B4_4306 at 4768.707 kb on - strand, within Pf1N1B4_4306 at 4768.707 kb on - strand, within Pf1N1B4_4306 at 4768.707 kb on - strand, within Pf1N1B4_4306 at 4768.707 kb on - strand, within Pf1N1B4_4306 at 4768.707 kb on - strand, within Pf1N1B4_4306 at 4768.707 kb on - strand, within Pf1N1B4_4306 at 4768.711 kb on - strand, within Pf1N1B4_4306 at 4768.907 kb on + strand, within Pf1N1B4_4306 at 4768.907 kb on + strand at 4768.908 kb on - strand, within Pf1N1B4_4306 at 4768.913 kb on + strand at 4768.913 kb on + strand, within Pf1N1B4_4306 at 4768.991 kb on + strand, within Pf1N1B4_4306 at 4769.307 kb on - strand, within Pf1N1B4_4306 at 4769.388 kb on + strand, within Pf1N1B4_4306 at 4769.556 kb on - strand at 4769.560 kb on - strand at 4769.763 kb on + strand, within Pf1N1B4_4307 at 4769.763 kb on + strand, within Pf1N1B4_4307 at 4769.763 kb on + strand, within Pf1N1B4_4307 at 4769.764 kb on - strand, within Pf1N1B4_4307 at 4769.764 kb on - strand, within Pf1N1B4_4307 at 4769.764 kb on - strand, within Pf1N1B4_4307 at 4769.800 kb on + strand, within Pf1N1B4_4307 at 4769.931 kb on + strand, within Pf1N1B4_4307 at 4769.932 kb on - strand, within Pf1N1B4_4307 at 4769.951 kb on + strand, within Pf1N1B4_4307 at 4769.952 kb on - strand, within Pf1N1B4_4307 at 4769.952 kb on - strand, within Pf1N1B4_4307 at 4770.370 kb on - strand at 4770.436 kb on - strand at 4770.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (C) remove 4,767,618 - -1.1 4,767,692 + +1.7 4,767,700 + Pf1N1B4_4305 0.11 -0.3 4,767,700 + Pf1N1B4_4305 0.11 +0.7 4,767,701 - Pf1N1B4_4305 0.11 -1.4 4,767,701 - Pf1N1B4_4305 0.11 -1.8 4,767,834 + Pf1N1B4_4305 0.27 +0.1 4,767,834 + Pf1N1B4_4305 0.27 -0.7 4,768,266 + Pf1N1B4_4305 0.80 -0.3 4,768,435 + +0.7 4,768,435 + +0.2 4,768,435 + -0.7 4,768,435 + -0.5 4,768,435 + +1.0 4,768,435 + -1.0 4,768,435 + -1.3 4,768,435 + +0.0 4,768,435 + -0.3 4,768,436 - -0.3 4,768,436 - +0.7 4,768,436 - -0.3 4,768,436 - -1.4 4,768,436 - -0.9 4,768,436 - -0.3 4,768,436 - -0.3 4,768,436 - +0.7 4,768,436 - +0.9 4,768,436 - -0.8 4,768,436 - -1.1 4,768,436 - -0.3 4,768,436 - -1.4 4,768,592 + -1.8 4,768,593 - +0.7 4,768,706 + Pf1N1B4_4306 0.15 -1.3 4,768,707 - Pf1N1B4_4306 0.15 +0.1 4,768,707 - Pf1N1B4_4306 0.15 -0.5 4,768,707 - Pf1N1B4_4306 0.15 -1.3 4,768,707 - Pf1N1B4_4306 0.15 +1.1 4,768,707 - Pf1N1B4_4306 0.15 +1.1 4,768,707 - Pf1N1B4_4306 0.15 +0.7 4,768,707 - Pf1N1B4_4306 0.15 -0.3 4,768,711 - Pf1N1B4_4306 0.15 -0.8 4,768,907 + Pf1N1B4_4306 0.36 +1.3 4,768,907 + +0.7 4,768,908 - Pf1N1B4_4306 0.36 +0.3 4,768,913 + -0.3 4,768,913 + Pf1N1B4_4306 0.37 -0.8 4,768,991 + Pf1N1B4_4306 0.45 -1.3 4,769,307 - Pf1N1B4_4306 0.80 +0.4 4,769,388 + Pf1N1B4_4306 0.88 +1.6 4,769,556 - +2.1 4,769,560 - +0.6 4,769,763 + Pf1N1B4_4307 0.29 +0.7 4,769,763 + Pf1N1B4_4307 0.29 +0.7 4,769,763 + Pf1N1B4_4307 0.29 -1.8 4,769,764 - Pf1N1B4_4307 0.29 -1.0 4,769,764 - Pf1N1B4_4307 0.29 -0.7 4,769,764 - Pf1N1B4_4307 0.29 -0.3 4,769,800 + Pf1N1B4_4307 0.38 -0.3 4,769,931 + Pf1N1B4_4307 0.72 -0.3 4,769,932 - Pf1N1B4_4307 0.72 +1.1 4,769,951 + Pf1N1B4_4307 0.77 -0.8 4,769,952 - Pf1N1B4_4307 0.77 -1.3 4,769,952 - Pf1N1B4_4307 0.77 +2.1 4,770,370 - -1.3 4,770,436 - -0.3 4,770,478 - -0.3
Or see this region's nucleotide sequence