Experiment: LB, pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_902 and Ac3H11_903 are separated by 90 nucleotides Ac3H11_903 and Ac3H11_904 are separated by 183 nucleotides
Ac3H11_902 - Glycine cleavage system transcriptional activator, at 13,835 to 14,713
_902
Ac3H11_903 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 14,804 to 17,833
_903
Ac3H11_904 - Chemotactic transducer-related protein, at 18,017 to 19,645
_904
Position (kb) 14
15
16
17
18 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 14.784 kb on + strand at 14.805 kb on + strand at 14.805 kb on + strand at 14.805 kb on + strand at 14.805 kb on + strand at 14.805 kb on + strand at 14.805 kb on + strand at 14.806 kb on - strand at 14.806 kb on - strand at 14.806 kb on - strand at 15.064 kb on - strand at 15.240 kb on + strand, within Ac3H11_903 at 15.240 kb on + strand, within Ac3H11_903 at 15.240 kb on + strand, within Ac3H11_903 at 15.240 kb on + strand, within Ac3H11_903 at 15.240 kb on + strand, within Ac3H11_903 at 15.241 kb on - strand, within Ac3H11_903 at 15.241 kb on - strand, within Ac3H11_903 at 15.241 kb on - strand, within Ac3H11_903 at 15.281 kb on - strand, within Ac3H11_903 at 15.281 kb on - strand, within Ac3H11_903 at 15.486 kb on + strand, within Ac3H11_903 at 15.486 kb on + strand, within Ac3H11_903 at 15.486 kb on + strand, within Ac3H11_903 at 15.486 kb on + strand, within Ac3H11_903 at 15.499 kb on - strand, within Ac3H11_903 at 15.499 kb on - strand, within Ac3H11_903 at 15.538 kb on + strand, within Ac3H11_903 at 15.539 kb on - strand, within Ac3H11_903 at 15.539 kb on - strand, within Ac3H11_903 at 15.636 kb on + strand, within Ac3H11_903 at 15.636 kb on + strand, within Ac3H11_903 at 16.080 kb on + strand, within Ac3H11_903 at 16.113 kb on + strand, within Ac3H11_903 at 16.113 kb on + strand, within Ac3H11_903 at 16.114 kb on - strand, within Ac3H11_903 at 16.114 kb on - strand, within Ac3H11_903 at 16.114 kb on - strand, within Ac3H11_903 at 16.114 kb on - strand, within Ac3H11_903 at 16.114 kb on - strand, within Ac3H11_903 at 16.388 kb on + strand, within Ac3H11_903 at 16.389 kb on - strand, within Ac3H11_903 at 16.422 kb on + strand, within Ac3H11_903 at 16.423 kb on - strand, within Ac3H11_903 at 16.423 kb on - strand, within Ac3H11_903 at 16.521 kb on + strand, within Ac3H11_903 at 16.521 kb on + strand, within Ac3H11_903 at 16.521 kb on + strand, within Ac3H11_903 at 16.521 kb on + strand, within Ac3H11_903 at 16.522 kb on - strand, within Ac3H11_903 at 16.522 kb on - strand, within Ac3H11_903 at 16.728 kb on - strand, within Ac3H11_903 at 16.851 kb on + strand, within Ac3H11_903 at 16.852 kb on - strand, within Ac3H11_903 at 16.852 kb on - strand, within Ac3H11_903 at 16.852 kb on - strand, within Ac3H11_903 at 16.852 kb on - strand, within Ac3H11_903 at 16.915 kb on + strand, within Ac3H11_903 at 16.915 kb on + strand, within Ac3H11_903 at 16.916 kb on - strand, within Ac3H11_903 at 17.226 kb on + strand, within Ac3H11_903 at 17.226 kb on + strand, within Ac3H11_903 at 17.293 kb on - strand, within Ac3H11_903 at 17.349 kb on + strand, within Ac3H11_903 at 17.349 kb on + strand, within Ac3H11_903 at 17.350 kb on - strand, within Ac3H11_903 at 17.350 kb on - strand, within Ac3H11_903 at 17.382 kb on + strand, within Ac3H11_903 at 17.382 kb on + strand, within Ac3H11_903 at 17.382 kb on + strand, within Ac3H11_903 at 17.382 kb on + strand, within Ac3H11_903 at 17.383 kb on - strand, within Ac3H11_903 at 17.383 kb on - strand, within Ac3H11_903 at 17.436 kb on + strand, within Ac3H11_903 at 17.436 kb on + strand, within Ac3H11_903 at 17.436 kb on + strand, within Ac3H11_903 at 17.437 kb on - strand, within Ac3H11_903 at 17.496 kb on + strand, within Ac3H11_903 at 17.496 kb on + strand, within Ac3H11_903 at 17.497 kb on - strand, within Ac3H11_903 at 17.668 kb on + strand at 17.760 kb on + strand at 17.760 kb on + strand at 17.760 kb on + strand at 17.760 kb on + strand at 17.839 kb on + strand at 17.840 kb on - strand at 18.019 kb on - strand at 18.019 kb on - strand at 18.019 kb on - strand at 18.090 kb on + strand at 18.090 kb on + strand at 18.090 kb on + strand at 18.091 kb on - strand at 18.091 kb on - strand at 18.091 kb on - strand at 18.091 kb on - strand at 18.199 kb on - strand, within Ac3H11_904 at 18.199 kb on - strand, within Ac3H11_904 at 18.199 kb on - strand, within Ac3H11_904 at 18.333 kb on + strand, within Ac3H11_904 at 18.334 kb on - strand, within Ac3H11_904 at 18.405 kb on + strand, within Ac3H11_904 at 18.406 kb on - strand, within Ac3H11_904 at 18.406 kb on - strand, within Ac3H11_904 at 18.406 kb on - strand, within Ac3H11_904 at 18.406 kb on - strand, within Ac3H11_904 at 18.406 kb on - strand, within Ac3H11_904 at 18.406 kb on - strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.768 kb on + strand, within Ac3H11_904 at 18.769 kb on - strand, within Ac3H11_904 at 18.769 kb on - strand, within Ac3H11_904 at 18.769 kb on - strand, within Ac3H11_904 at 18.769 kb on - strand, within Ac3H11_904 at 18.769 kb on - strand, within Ac3H11_904
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH9 remove 14,784 + -0.6 14,805 + -0.2 14,805 + +1.0 14,805 + -0.6 14,805 + -1.1 14,805 + +0.5 14,805 + +0.1 14,806 - +0.9 14,806 - -0.9 14,806 - -0.9 15,064 - +1.9 15,240 + Ac3H11_903 0.14 +0.4 15,240 + Ac3H11_903 0.14 +1.4 15,240 + Ac3H11_903 0.14 +0.8 15,240 + Ac3H11_903 0.14 -1.3 15,240 + Ac3H11_903 0.14 +0.6 15,241 - Ac3H11_903 0.14 -0.4 15,241 - Ac3H11_903 0.14 -0.3 15,241 - Ac3H11_903 0.14 -1.5 15,281 - Ac3H11_903 0.16 +0.1 15,281 - Ac3H11_903 0.16 -0.9 15,486 + Ac3H11_903 0.23 -0.5 15,486 + Ac3H11_903 0.23 -0.6 15,486 + Ac3H11_903 0.23 -0.3 15,486 + Ac3H11_903 0.23 +0.3 15,499 - Ac3H11_903 0.23 -0.3 15,499 - Ac3H11_903 0.23 -0.1 15,538 + Ac3H11_903 0.24 -0.8 15,539 - Ac3H11_903 0.24 -0.0 15,539 - Ac3H11_903 0.24 -0.2 15,636 + Ac3H11_903 0.27 +0.2 15,636 + Ac3H11_903 0.27 +3.3 16,080 + Ac3H11_903 0.42 -0.7 16,113 + Ac3H11_903 0.43 +0.9 16,113 + Ac3H11_903 0.43 -1.8 16,114 - Ac3H11_903 0.43 -0.1 16,114 - Ac3H11_903 0.43 +1.3 16,114 - Ac3H11_903 0.43 -0.2 16,114 - Ac3H11_903 0.43 +0.5 16,114 - Ac3H11_903 0.43 +0.4 16,388 + Ac3H11_903 0.52 -0.8 16,389 - Ac3H11_903 0.52 +0.4 16,422 + Ac3H11_903 0.53 +0.7 16,423 - Ac3H11_903 0.53 -0.1 16,423 - Ac3H11_903 0.53 -0.0 16,521 + Ac3H11_903 0.57 +0.4 16,521 + Ac3H11_903 0.57 +0.1 16,521 + Ac3H11_903 0.57 +0.5 16,521 + Ac3H11_903 0.57 +0.1 16,522 - Ac3H11_903 0.57 -0.7 16,522 - Ac3H11_903 0.57 +0.4 16,728 - Ac3H11_903 0.63 -0.1 16,851 + Ac3H11_903 0.68 -0.6 16,852 - Ac3H11_903 0.68 -0.3 16,852 - Ac3H11_903 0.68 -2.0 16,852 - Ac3H11_903 0.68 +0.6 16,852 - Ac3H11_903 0.68 +0.0 16,915 + Ac3H11_903 0.70 -0.1 16,915 + Ac3H11_903 0.70 +0.9 16,916 - Ac3H11_903 0.70 -0.7 17,226 + Ac3H11_903 0.80 -0.1 17,226 + Ac3H11_903 0.80 +2.3 17,293 - Ac3H11_903 0.82 -0.8 17,349 + Ac3H11_903 0.84 +0.0 17,349 + Ac3H11_903 0.84 -1.0 17,350 - Ac3H11_903 0.84 -0.3 17,350 - Ac3H11_903 0.84 +0.1 17,382 + Ac3H11_903 0.85 +0.8 17,382 + Ac3H11_903 0.85 -0.2 17,382 + Ac3H11_903 0.85 +0.5 17,382 + Ac3H11_903 0.85 -0.3 17,383 - Ac3H11_903 0.85 -1.7 17,383 - Ac3H11_903 0.85 -0.4 17,436 + Ac3H11_903 0.87 -0.0 17,436 + Ac3H11_903 0.87 +0.0 17,436 + Ac3H11_903 0.87 +0.3 17,437 - Ac3H11_903 0.87 -0.1 17,496 + Ac3H11_903 0.89 +1.1 17,496 + Ac3H11_903 0.89 +0.4 17,497 - Ac3H11_903 0.89 -0.0 17,668 + -0.2 17,760 + -1.9 17,760 + -0.9 17,760 + -0.0 17,760 + +1.7 17,839 + -0.0 17,840 - +0.4 18,019 - +0.0 18,019 - +0.2 18,019 - -0.0 18,090 + +0.0 18,090 + +0.8 18,090 + -1.1 18,091 - -0.2 18,091 - +0.0 18,091 - +0.1 18,091 - -0.6 18,199 - Ac3H11_904 0.11 +0.7 18,199 - Ac3H11_904 0.11 -0.2 18,199 - Ac3H11_904 0.11 +0.4 18,333 + Ac3H11_904 0.19 -1.4 18,334 - Ac3H11_904 0.19 +0.4 18,405 + Ac3H11_904 0.24 +0.5 18,406 - Ac3H11_904 0.24 -0.9 18,406 - Ac3H11_904 0.24 -0.4 18,406 - Ac3H11_904 0.24 +0.3 18,406 - Ac3H11_904 0.24 -2.1 18,406 - Ac3H11_904 0.24 -0.9 18,406 - Ac3H11_904 0.24 -0.3 18,768 + Ac3H11_904 0.46 +0.8 18,768 + Ac3H11_904 0.46 +0.7 18,768 + Ac3H11_904 0.46 -0.1 18,768 + Ac3H11_904 0.46 +0.2 18,768 + Ac3H11_904 0.46 -0.2 18,768 + Ac3H11_904 0.46 +0.2 18,768 + Ac3H11_904 0.46 +0.1 18,769 - Ac3H11_904 0.46 +1.7 18,769 - Ac3H11_904 0.46 +0.3 18,769 - Ac3H11_904 0.46 +0.8 18,769 - Ac3H11_904 0.46 +1.4 18,769 - Ac3H11_904 0.46 -0.5
Or see this region's nucleotide sequence