Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4784

Experiment: LB, pH9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_4783 and Ac3H11_4784 are separated by 111 nucleotidesAc3H11_4784 and Ac3H11_4785 are separated by 159 nucleotides Ac3H11_4783 - Tricarboxylate transport protein TctC, at 82,941 to 83,927 _4783 Ac3H11_4784 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 84,039 to 84,782 _4784 Ac3H11_4785 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 84,942 to 85,946 _4785 Position (kb) 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 83.151 kb on + strand, within Ac3H11_4783at 83.151 kb on + strand, within Ac3H11_4783at 83.151 kb on + strand, within Ac3H11_4783at 83.151 kb on + strand, within Ac3H11_4783at 83.151 kb on + strand, within Ac3H11_4783at 83.151 kb on + strand, within Ac3H11_4783at 83.151 kb on + strand, within Ac3H11_4783at 83.151 kb on + strand, within Ac3H11_4783at 83.151 kb on + strand, within Ac3H11_4783at 83.151 kb on + strand, within Ac3H11_4783at 83.151 kb on + strand, within Ac3H11_4783at 83.151 kb on + strand, within Ac3H11_4783at 83.151 kb on + strand, within Ac3H11_4783at 83.152 kb on - strand, within Ac3H11_4783at 83.152 kb on - strand, within Ac3H11_4783at 83.152 kb on - strand, within Ac3H11_4783at 83.152 kb on - strand, within Ac3H11_4783at 83.152 kb on - strand, within Ac3H11_4783at 83.152 kb on - strand, within Ac3H11_4783at 83.152 kb on - strand, within Ac3H11_4783at 83.152 kb on - strand, within Ac3H11_4783at 83.152 kb on - strand, within Ac3H11_4783at 83.152 kb on - strand, within Ac3H11_4783at 83.152 kb on - strand, within Ac3H11_4783at 83.152 kb on - strand, within Ac3H11_4783at 83.265 kb on + strand, within Ac3H11_4783at 83.265 kb on + strand, within Ac3H11_4783at 83.265 kb on + strand, within Ac3H11_4783at 83.265 kb on + strand, within Ac3H11_4783at 83.266 kb on - strand, within Ac3H11_4783at 83.266 kb on - strand, within Ac3H11_4783at 83.281 kb on - strand, within Ac3H11_4783at 83.388 kb on + strand, within Ac3H11_4783at 83.388 kb on + strand, within Ac3H11_4783at 83.388 kb on + strand, within Ac3H11_4783at 83.389 kb on - strand, within Ac3H11_4783at 83.389 kb on - strand, within Ac3H11_4783at 83.590 kb on - strand, within Ac3H11_4783at 83.710 kb on - strand, within Ac3H11_4783at 83.710 kb on - strand, within Ac3H11_4783at 83.710 kb on - strand, within Ac3H11_4783at 83.718 kb on - strand, within Ac3H11_4783at 84.139 kb on + strand, within Ac3H11_4784at 84.139 kb on + strand, within Ac3H11_4784at 84.139 kb on + strand, within Ac3H11_4784at 84.140 kb on - strand, within Ac3H11_4784at 84.140 kb on - strand, within Ac3H11_4784at 84.140 kb on - strand, within Ac3H11_4784at 84.140 kb on - strand, within Ac3H11_4784at 84.140 kb on - strand, within Ac3H11_4784at 84.140 kb on - strand, within Ac3H11_4784at 84.682 kb on + strand, within Ac3H11_4784at 84.682 kb on + strand, within Ac3H11_4784at 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 85.081 kb on + strand, within Ac3H11_4785at 85.081 kb on + strand, within Ac3H11_4785at 85.081 kb on + strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.271 kb on - strand, within Ac3H11_4785at 85.271 kb on - strand, within Ac3H11_4785at 85.271 kb on - strand, within Ac3H11_4785at 85.642 kb on + strand, within Ac3H11_4785at 85.642 kb on + strand, within Ac3H11_4785at 85.642 kb on + strand, within Ac3H11_4785at 85.643 kb on - strand, within Ac3H11_4785at 85.643 kb on - strand, within Ac3H11_4785at 85.643 kb on - strand, within Ac3H11_4785at 85.676 kb on - strand, within Ac3H11_4785at 85.684 kb on + strand, within Ac3H11_4785at 85.684 kb on + strand, within Ac3H11_4785at 85.685 kb on - strand, within Ac3H11_4785at 85.685 kb on - strand, within Ac3H11_4785at 85.685 kb on - strand, within Ac3H11_4785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH9
remove
83,151 + Ac3H11_4783 0.21 -1.0
83,151 + Ac3H11_4783 0.21 -0.8
83,151 + Ac3H11_4783 0.21 -0.3
83,151 + Ac3H11_4783 0.21 +4.3
83,151 + Ac3H11_4783 0.21 +0.6
83,151 + Ac3H11_4783 0.21 -0.8
83,151 + Ac3H11_4783 0.21 -0.0
83,151 + Ac3H11_4783 0.21 -0.3
83,151 + Ac3H11_4783 0.21 +0.6
83,151 + Ac3H11_4783 0.21 -3.3
83,151 + Ac3H11_4783 0.21 -0.1
83,151 + Ac3H11_4783 0.21 -0.9
83,151 + Ac3H11_4783 0.21 -0.2
83,152 - Ac3H11_4783 0.21 -0.3
83,152 - Ac3H11_4783 0.21 +0.7
83,152 - Ac3H11_4783 0.21 +1.0
83,152 - Ac3H11_4783 0.21 -1.0
83,152 - Ac3H11_4783 0.21 -1.3
83,152 - Ac3H11_4783 0.21 -0.8
83,152 - Ac3H11_4783 0.21 -0.2
83,152 - Ac3H11_4783 0.21 -0.8
83,152 - Ac3H11_4783 0.21 -0.3
83,152 - Ac3H11_4783 0.21 -0.1
83,152 - Ac3H11_4783 0.21 -0.3
83,152 - Ac3H11_4783 0.21 -0.4
83,265 + Ac3H11_4783 0.33 -0.4
83,265 + Ac3H11_4783 0.33 +0.4
83,265 + Ac3H11_4783 0.33 +0.1
83,265 + Ac3H11_4783 0.33 +0.6
83,266 - Ac3H11_4783 0.33 -0.1
83,266 - Ac3H11_4783 0.33 +0.2
83,281 - Ac3H11_4783 0.34 +0.9
83,388 + Ac3H11_4783 0.45 +0.3
83,388 + Ac3H11_4783 0.45 +0.5
83,388 + Ac3H11_4783 0.45 -1.2
83,389 - Ac3H11_4783 0.45 -1.4
83,389 - Ac3H11_4783 0.45 +0.4
83,590 - Ac3H11_4783 0.66 -0.1
83,710 - Ac3H11_4783 0.78 -0.6
83,710 - Ac3H11_4783 0.78 +0.6
83,710 - Ac3H11_4783 0.78 +0.1
83,718 - Ac3H11_4783 0.79 +1.5
84,139 + Ac3H11_4784 0.13 +0.1
84,139 + Ac3H11_4784 0.13 +0.8
84,139 + Ac3H11_4784 0.13 -0.0
84,140 - Ac3H11_4784 0.14 +0.2
84,140 - Ac3H11_4784 0.14 +0.8
84,140 - Ac3H11_4784 0.14 +0.3
84,140 - Ac3H11_4784 0.14 +0.2
84,140 - Ac3H11_4784 0.14 -0.2
84,140 - Ac3H11_4784 0.14 +0.7
84,682 + Ac3H11_4784 0.86 +0.2
84,682 + Ac3H11_4784 0.86 +3.4
84,798 + -0.3
84,798 + -0.8
84,798 + -0.3
84,798 + +0.1
84,798 + -0.6
84,798 + +0.5
84,798 + +0.6
84,798 + -2.5
84,798 + -0.3
84,798 + +0.0
84,798 + -0.4
84,798 + +0.5
84,798 + -0.6
84,798 + -0.7
84,799 - +1.2
84,799 - -1.4
84,799 - -0.7
84,799 - +0.5
84,799 - +0.5
84,799 - -0.5
84,799 - -0.1
84,799 - -0.3
84,799 - -1.8
84,799 - -0.5
85,081 + Ac3H11_4785 0.14 +0.1
85,081 + Ac3H11_4785 0.14 -0.1
85,081 + Ac3H11_4785 0.14 +0.4
85,082 - Ac3H11_4785 0.14 +0.5
85,082 - Ac3H11_4785 0.14 +0.0
85,082 - Ac3H11_4785 0.14 +0.7
85,082 - Ac3H11_4785 0.14 +0.3
85,082 - Ac3H11_4785 0.14 +0.5
85,082 - Ac3H11_4785 0.14 +0.8
85,082 - Ac3H11_4785 0.14 +0.6
85,082 - Ac3H11_4785 0.14 +0.0
85,082 - Ac3H11_4785 0.14 +0.4
85,082 - Ac3H11_4785 0.14 +0.1
85,270 + Ac3H11_4785 0.33 +0.8
85,270 + Ac3H11_4785 0.33 +0.2
85,270 + Ac3H11_4785 0.33 +0.5
85,270 + Ac3H11_4785 0.33 +0.6
85,270 + Ac3H11_4785 0.33 +1.8
85,270 + Ac3H11_4785 0.33 +0.2
85,270 + Ac3H11_4785 0.33 +0.2
85,271 - Ac3H11_4785 0.33 +0.6
85,271 - Ac3H11_4785 0.33 +0.7
85,271 - Ac3H11_4785 0.33 +0.2
85,642 + Ac3H11_4785 0.70 +0.5
85,642 + Ac3H11_4785 0.70 +0.5
85,642 + Ac3H11_4785 0.70 +0.3
85,643 - Ac3H11_4785 0.70 +0.8
85,643 - Ac3H11_4785 0.70 +1.5
85,643 - Ac3H11_4785 0.70 +0.6
85,676 - Ac3H11_4785 0.73 +0.8
85,684 + Ac3H11_4785 0.74 +0.6
85,684 + Ac3H11_4785 0.74 +0.8
85,685 - Ac3H11_4785 0.74 +0.6
85,685 - Ac3H11_4785 0.74 +1.6
85,685 - Ac3H11_4785 0.74 +0.0

Or see this region's nucleotide sequence