Experiment: LB, pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4463 and Ac3H11_4464 are separated by 45 nucleotides Ac3H11_4464 and Ac3H11_4693 are separated by 52 nucleotides Ac3H11_4693 and Ac3H11_4465 are separated by 197 nucleotides
Ac3H11_4463 - Nitrogen regulation protein NtrY (EC 2.7.3.-), at 45,341 to 47,632
_4463
Ac3H11_4464 - Probable two component response regulator transcription regulator protein, at 47,678 to 48,361
_4464
Ac3H11_4693 - tRNA-Phe-GAA, at 48,414 to 48,486
_4693
Ac3H11_4465 - Putative heat shock protein YegD, at 48,684 to 49,937
_4465
Position (kb) 47
48
49 Strain fitness (log2 ratio) -1
0
1
2 at 47.616 kb on + strand at 47.633 kb on + strand at 47.633 kb on + strand at 47.633 kb on + strand at 48.359 kb on + strand at 48.359 kb on + strand at 48.359 kb on + strand at 48.648 kb on - strand at 48.873 kb on + strand, within Ac3H11_4465 at 48.873 kb on + strand, within Ac3H11_4465 at 48.873 kb on + strand, within Ac3H11_4465 at 48.873 kb on + strand, within Ac3H11_4465 at 48.873 kb on + strand, within Ac3H11_4465 at 48.874 kb on - strand, within Ac3H11_4465 at 48.874 kb on - strand, within Ac3H11_4465 at 48.874 kb on - strand, within Ac3H11_4465 at 48.874 kb on - strand, within Ac3H11_4465 at 48.975 kb on + strand, within Ac3H11_4465 at 48.975 kb on + strand, within Ac3H11_4465 at 48.975 kb on + strand, within Ac3H11_4465 at 48.975 kb on + strand, within Ac3H11_4465 at 48.976 kb on - strand, within Ac3H11_4465 at 48.976 kb on - strand, within Ac3H11_4465 at 48.976 kb on - strand, within Ac3H11_4465 at 48.976 kb on - strand, within Ac3H11_4465 at 48.976 kb on - strand, within Ac3H11_4465 at 49.197 kb on + strand, within Ac3H11_4465 at 49.198 kb on - strand, within Ac3H11_4465 at 49.228 kb on + strand, within Ac3H11_4465 at 49.228 kb on + strand, within Ac3H11_4465 at 49.229 kb on - strand, within Ac3H11_4465 at 49.229 kb on - strand, within Ac3H11_4465
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH9 remove 47,616 + +0.0 47,633 + +1.1 47,633 + +0.9 47,633 + +0.8 48,359 + -0.1 48,359 + +0.3 48,359 + +0.2 48,648 - +0.5 48,873 + Ac3H11_4465 0.15 -1.0 48,873 + Ac3H11_4465 0.15 +0.2 48,873 + Ac3H11_4465 0.15 -0.4 48,873 + Ac3H11_4465 0.15 +0.5 48,873 + Ac3H11_4465 0.15 +0.6 48,874 - Ac3H11_4465 0.15 +0.6 48,874 - Ac3H11_4465 0.15 +0.5 48,874 - Ac3H11_4465 0.15 +0.9 48,874 - Ac3H11_4465 0.15 -0.5 48,975 + Ac3H11_4465 0.23 -0.4 48,975 + Ac3H11_4465 0.23 +0.3 48,975 + Ac3H11_4465 0.23 +0.5 48,975 + Ac3H11_4465 0.23 +0.1 48,976 - Ac3H11_4465 0.23 -0.2 48,976 - Ac3H11_4465 0.23 +0.5 48,976 - Ac3H11_4465 0.23 -0.0 48,976 - Ac3H11_4465 0.23 +0.4 48,976 - Ac3H11_4465 0.23 +0.2 49,197 + Ac3H11_4465 0.41 +0.3 49,198 - Ac3H11_4465 0.41 +2.4 49,228 + Ac3H11_4465 0.43 +1.1 49,228 + Ac3H11_4465 0.43 +0.8 49,229 - Ac3H11_4465 0.43 -0.5 49,229 - Ac3H11_4465 0.43 +0.5
Or see this region's nucleotide sequence