Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2255

Experiment: LB, pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2254 and Ac3H11_2255 are separated by 41 nucleotidesAc3H11_2255 and Ac3H11_2256 overlap by 4 nucleotides Ac3H11_2254 - Transmembrane transport protein, at 488,258 to 489,520 _2254 Ac3H11_2255 - Acyl dehydratase, at 489,562 to 490,089 _2255 Ac3H11_2256 - Na+ driven multidrug efflux pump, at 490,086 to 491,507 _2256 Position (kb) 489 490 491Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 488.570 kb on + strand, within Ac3H11_2254at 488.570 kb on + strand, within Ac3H11_2254at 488.570 kb on + strand, within Ac3H11_2254at 488.570 kb on + strand, within Ac3H11_2254at 488.570 kb on + strand, within Ac3H11_2254at 488.571 kb on - strand, within Ac3H11_2254at 488.571 kb on - strand, within Ac3H11_2254at 488.571 kb on - strand, within Ac3H11_2254at 488.571 kb on - strand, within Ac3H11_2254at 488.571 kb on - strand, within Ac3H11_2254at 488.571 kb on - strand, within Ac3H11_2254at 488.571 kb on - strand, within Ac3H11_2254at 488.571 kb on - strand, within Ac3H11_2254at 488.951 kb on + strand, within Ac3H11_2254at 488.958 kb on - strand, within Ac3H11_2254at 488.958 kb on - strand, within Ac3H11_2254at 488.958 kb on - strand, within Ac3H11_2254at 488.958 kb on - strand, within Ac3H11_2254at 489.136 kb on + strand, within Ac3H11_2254at 489.137 kb on - strand, within Ac3H11_2254at 489.137 kb on - strand, within Ac3H11_2254at 489.137 kb on - strand, within Ac3H11_2254at 489.161 kb on + strand, within Ac3H11_2254at 489.161 kb on + strand, within Ac3H11_2254at 489.162 kb on - strand, within Ac3H11_2254at 489.162 kb on - strand, within Ac3H11_2254at 489.374 kb on + strand, within Ac3H11_2254at 489.374 kb on + strand, within Ac3H11_2254at 489.375 kb on - strand, within Ac3H11_2254at 489.375 kb on - strand, within Ac3H11_2254at 489.375 kb on - strand, within Ac3H11_2254at 489.410 kb on + strandat 489.410 kb on + strandat 489.410 kb on + strandat 489.411 kb on - strandat 489.411 kb on - strandat 489.425 kb on + strandat 489.426 kb on - strandat 489.616 kb on + strand, within Ac3H11_2255at 489.616 kb on + strand, within Ac3H11_2255at 489.616 kb on + strand, within Ac3H11_2255at 489.617 kb on - strand, within Ac3H11_2255at 489.617 kb on - strand, within Ac3H11_2255at 489.617 kb on - strand, within Ac3H11_2255at 489.617 kb on - strand, within Ac3H11_2255at 489.617 kb on - strand, within Ac3H11_2255at 490.230 kb on + strand, within Ac3H11_2256at 490.230 kb on + strand, within Ac3H11_2256at 490.230 kb on + strand, within Ac3H11_2256at 490.474 kb on - strand, within Ac3H11_2256at 490.474 kb on - strand, within Ac3H11_2256at 490.474 kb on - strand, within Ac3H11_2256at 490.474 kb on - strand, within Ac3H11_2256at 490.474 kb on - strand, within Ac3H11_2256at 490.521 kb on + strand, within Ac3H11_2256at 490.521 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.617 kb on + strand, within Ac3H11_2256at 490.618 kb on - strand, within Ac3H11_2256at 490.618 kb on - strand, within Ac3H11_2256at 490.618 kb on - strand, within Ac3H11_2256at 490.618 kb on - strand, within Ac3H11_2256at 490.618 kb on - strand, within Ac3H11_2256at 490.618 kb on - strand, within Ac3H11_2256at 490.731 kb on + strand, within Ac3H11_2256at 490.731 kb on + strand, within Ac3H11_2256at 490.731 kb on + strand, within Ac3H11_2256at 490.734 kb on + strand, within Ac3H11_2256at 490.734 kb on + strand, within Ac3H11_2256at 490.735 kb on - strand, within Ac3H11_2256at 490.735 kb on - strand, within Ac3H11_2256at 490.735 kb on - strand, within Ac3H11_2256at 490.735 kb on - strand, within Ac3H11_2256at 490.764 kb on + strand, within Ac3H11_2256at 490.764 kb on + strand, within Ac3H11_2256at 490.764 kb on + strand, within Ac3H11_2256at 490.764 kb on + strand, within Ac3H11_2256at 490.765 kb on - strand, within Ac3H11_2256at 490.765 kb on - strand, within Ac3H11_2256at 490.947 kb on + strand, within Ac3H11_2256at 490.948 kb on - strand, within Ac3H11_2256at 490.971 kb on + strand, within Ac3H11_2256at 490.971 kb on + strand, within Ac3H11_2256at 490.972 kb on - strand, within Ac3H11_2256at 490.972 kb on - strand, within Ac3H11_2256

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH9
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488,570 + Ac3H11_2254 0.25 +0.6
488,570 + Ac3H11_2254 0.25 +0.5
488,570 + Ac3H11_2254 0.25 +0.5
488,570 + Ac3H11_2254 0.25 +0.4
488,570 + Ac3H11_2254 0.25 -0.3
488,571 - Ac3H11_2254 0.25 +0.4
488,571 - Ac3H11_2254 0.25 -0.2
488,571 - Ac3H11_2254 0.25 -0.2
488,571 - Ac3H11_2254 0.25 +1.1
488,571 - Ac3H11_2254 0.25 +0.2
488,571 - Ac3H11_2254 0.25 +0.4
488,571 - Ac3H11_2254 0.25 +0.0
488,571 - Ac3H11_2254 0.25 -0.5
488,951 + Ac3H11_2254 0.55 -0.1
488,958 - Ac3H11_2254 0.55 +0.1
488,958 - Ac3H11_2254 0.55 +0.5
488,958 - Ac3H11_2254 0.55 -0.2
488,958 - Ac3H11_2254 0.55 +0.9
489,136 + Ac3H11_2254 0.70 +0.4
489,137 - Ac3H11_2254 0.70 -1.4
489,137 - Ac3H11_2254 0.70 +0.5
489,137 - Ac3H11_2254 0.70 +0.3
489,161 + Ac3H11_2254 0.71 +0.8
489,161 + Ac3H11_2254 0.71 +0.0
489,162 - Ac3H11_2254 0.72 -0.1
489,162 - Ac3H11_2254 0.72 -0.2
489,374 + Ac3H11_2254 0.88 -1.1
489,374 + Ac3H11_2254 0.88 -0.7
489,375 - Ac3H11_2254 0.88 -0.3
489,375 - Ac3H11_2254 0.88 +0.3
489,375 - Ac3H11_2254 0.88 -0.8
489,410 + +0.1
489,410 + -0.6
489,410 + +0.0
489,411 - +0.1
489,411 - +0.4
489,425 + -0.3
489,426 - -0.3
489,616 + Ac3H11_2255 0.10 +0.3
489,616 + Ac3H11_2255 0.10 +0.7
489,616 + Ac3H11_2255 0.10 +0.2
489,617 - Ac3H11_2255 0.10 -0.4
489,617 - Ac3H11_2255 0.10 -1.4
489,617 - Ac3H11_2255 0.10 +5.9
489,617 - Ac3H11_2255 0.10 -1.2
489,617 - Ac3H11_2255 0.10 +0.9
490,230 + Ac3H11_2256 0.10 -0.2
490,230 + Ac3H11_2256 0.10 -0.4
490,230 + Ac3H11_2256 0.10 +0.7
490,474 - Ac3H11_2256 0.27 -1.3
490,474 - Ac3H11_2256 0.27 -1.1
490,474 - Ac3H11_2256 0.27 -0.5
490,474 - Ac3H11_2256 0.27 +0.1
490,474 - Ac3H11_2256 0.27 -0.1
490,521 + Ac3H11_2256 0.31 -0.6
490,521 + Ac3H11_2256 0.31 -0.8
490,617 + Ac3H11_2256 0.37 -1.4
490,617 + Ac3H11_2256 0.37 -1.1
490,617 + Ac3H11_2256 0.37 -0.3
490,617 + Ac3H11_2256 0.37 +0.0
490,617 + Ac3H11_2256 0.37 +1.0
490,617 + Ac3H11_2256 0.37 +0.3
490,617 + Ac3H11_2256 0.37 +0.3
490,617 + Ac3H11_2256 0.37 +1.1
490,617 + Ac3H11_2256 0.37 +0.3
490,617 + Ac3H11_2256 0.37 -1.0
490,617 + Ac3H11_2256 0.37 -1.4
490,617 + Ac3H11_2256 0.37 -0.1
490,617 + Ac3H11_2256 0.37 -0.9
490,618 - Ac3H11_2256 0.37 +0.3
490,618 - Ac3H11_2256 0.37 +0.3
490,618 - Ac3H11_2256 0.37 -0.0
490,618 - Ac3H11_2256 0.37 -0.5
490,618 - Ac3H11_2256 0.37 +0.8
490,618 - Ac3H11_2256 0.37 -1.3
490,731 + Ac3H11_2256 0.45 -1.0
490,731 + Ac3H11_2256 0.45 +0.1
490,731 + Ac3H11_2256 0.45 -0.4
490,734 + Ac3H11_2256 0.46 -0.0
490,734 + Ac3H11_2256 0.46 -0.6
490,735 - Ac3H11_2256 0.46 -0.2
490,735 - Ac3H11_2256 0.46 +0.6
490,735 - Ac3H11_2256 0.46 +0.3
490,735 - Ac3H11_2256 0.46 +0.6
490,764 + Ac3H11_2256 0.48 +0.3
490,764 + Ac3H11_2256 0.48 -1.1
490,764 + Ac3H11_2256 0.48 -0.4
490,764 + Ac3H11_2256 0.48 +0.5
490,765 - Ac3H11_2256 0.48 -0.8
490,765 - Ac3H11_2256 0.48 -0.8
490,947 + Ac3H11_2256 0.61 -0.3
490,948 - Ac3H11_2256 0.61 +0.9
490,971 + Ac3H11_2256 0.62 -1.0
490,971 + Ac3H11_2256 0.62 +0.1
490,972 - Ac3H11_2256 0.62 -0.6
490,972 - Ac3H11_2256 0.62 +0.9

Or see this region's nucleotide sequence