Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23735

Experiment: Choline chloride 358 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23725 and AO353_23730 overlap by 4 nucleotidesAO353_23730 and AO353_23735 are separated by 5 nucleotidesAO353_23735 and AO353_23740 are separated by 280 nucleotides AO353_23725: AO353_23725 - hypothetical protein, at 5,201,141 to 5,201,635 _23725 AO353_23730: AO353_23730 - hypothetical protein, at 5,201,632 to 5,202,576 _23730 AO353_23735: AO353_23735 - AAA family ATPase, at 5,202,582 to 5,203,541 _23735 AO353_23740: AO353_23740 - autotransporter subunit beta, at 5,203,822 to 5,204,883 _23740 Position (kb) 5202 5203 5204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5201.666 kb on + strandat 5201.666 kb on + strandat 5201.666 kb on + strandat 5201.667 kb on - strandat 5201.700 kb on + strandat 5202.159 kb on - strand, within AO353_23730at 5202.159 kb on - strand, within AO353_23730at 5202.159 kb on - strand, within AO353_23730at 5202.396 kb on - strand, within AO353_23730at 5202.396 kb on - strand, within AO353_23730at 5202.396 kb on - strand, within AO353_23730at 5202.396 kb on - strand, within AO353_23730at 5202.868 kb on + strand, within AO353_23735at 5202.869 kb on - strand, within AO353_23735at 5202.869 kb on - strand, within AO353_23735at 5202.892 kb on + strand, within AO353_23735at 5202.892 kb on + strand, within AO353_23735at 5202.893 kb on - strand, within AO353_23735at 5202.893 kb on - strand, within AO353_23735at 5202.893 kb on - strand, within AO353_23735at 5202.925 kb on - strand, within AO353_23735at 5202.925 kb on - strand, within AO353_23735at 5203.078 kb on + strand, within AO353_23735at 5203.078 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.145 kb on + strand, within AO353_23735at 5203.145 kb on + strand, within AO353_23735at 5203.146 kb on - strand, within AO353_23735at 5203.146 kb on - strand, within AO353_23735at 5203.146 kb on - strand, within AO353_23735at 5203.146 kb on - strand, within AO353_23735at 5203.603 kb on + strandat 5203.604 kb on - strandat 5203.608 kb on + strandat 5203.609 kb on - strandat 5203.767 kb on - strandat 5203.797 kb on + strandat 5203.797 kb on + strandat 5203.862 kb on + strandat 5203.862 kb on + strandat 5203.863 kb on - strandat 5203.863 kb on - strandat 5203.863 kb on - strandat 5203.863 kb on - strandat 5203.863 kb on - strandat 5203.863 kb on - strandat 5203.863 kb on - strandat 5203.863 kb on - strandat 5203.863 kb on - strandat 5203.863 kb on - strandat 5203.863 kb on - strandat 5203.892 kb on + strandat 5203.892 kb on + strandat 5203.893 kb on - strandat 5203.907 kb on + strandat 5203.907 kb on + strandat 5203.907 kb on + strandat 5203.908 kb on - strandat 5203.908 kb on - strandat 5203.908 kb on - strandat 5203.926 kb on + strandat 5203.926 kb on + strandat 5203.927 kb on - strandat 5203.958 kb on - strand, within AO353_23740at 5204.022 kb on + strand, within AO353_23740at 5204.022 kb on + strand, within AO353_23740at 5204.023 kb on - strand, within AO353_23740at 5204.023 kb on - strand, within AO353_23740at 5204.023 kb on - strand, within AO353_23740at 5204.031 kb on + strand, within AO353_23740at 5204.032 kb on - strand, within AO353_23740at 5204.032 kb on - strand, within AO353_23740at 5204.032 kb on - strand, within AO353_23740at 5204.054 kb on + strand, within AO353_23740at 5204.054 kb on + strand, within AO353_23740at 5204.054 kb on + strand, within AO353_23740at 5204.055 kb on - strand, within AO353_23740at 5204.055 kb on - strand, within AO353_23740at 5204.055 kb on - strand, within AO353_23740at 5204.055 kb on - strand, within AO353_23740at 5204.084 kb on + strand, within AO353_23740at 5204.084 kb on + strand, within AO353_23740at 5204.084 kb on + strand, within AO353_23740at 5204.084 kb on + strand, within AO353_23740at 5204.085 kb on - strand, within AO353_23740at 5204.085 kb on - strand, within AO353_23740at 5204.085 kb on - strand, within AO353_23740at 5204.085 kb on - strand, within AO353_23740at 5204.085 kb on - strand, within AO353_23740at 5204.085 kb on - strand, within AO353_23740at 5204.162 kb on + strand, within AO353_23740at 5204.178 kb on + strand, within AO353_23740at 5204.178 kb on + strand, within AO353_23740at 5204.179 kb on - strand, within AO353_23740at 5204.179 kb on - strand, within AO353_23740at 5204.181 kb on + strand, within AO353_23740at 5204.181 kb on + strand, within AO353_23740at 5204.182 kb on - strand, within AO353_23740at 5204.182 kb on - strand, within AO353_23740at 5204.182 kb on - strand, within AO353_23740at 5204.182 kb on - strand, within AO353_23740at 5204.182 kb on - strand, within AO353_23740at 5204.315 kb on + strand, within AO353_23740at 5204.385 kb on - strand, within AO353_23740at 5204.422 kb on - strand, within AO353_23740at 5204.422 kb on - strand, within AO353_23740at 5204.422 kb on - strand, within AO353_23740at 5204.481 kb on + strand, within AO353_23740at 5204.482 kb on - strand, within AO353_23740at 5204.533 kb on - strand, within AO353_23740

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 358 mM
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5,201,666 + +0.8
5,201,666 + +0.2
5,201,666 + -0.1
5,201,667 - -0.5
5,201,700 + -0.8
5,202,159 - AO353_23730 0.56 -1.6
5,202,159 - AO353_23730 0.56 -1.9
5,202,159 - AO353_23730 0.56 -0.8
5,202,396 - AO353_23730 0.81 +1.8
5,202,396 - AO353_23730 0.81 +0.2
5,202,396 - AO353_23730 0.81 -0.2
5,202,396 - AO353_23730 0.81 +0.2
5,202,868 + AO353_23735 0.30 -0.8
5,202,869 - AO353_23735 0.30 -2.1
5,202,869 - AO353_23735 0.30 -0.4
5,202,892 + AO353_23735 0.32 -2.6
5,202,892 + AO353_23735 0.32 +0.0
5,202,893 - AO353_23735 0.32 +0.5
5,202,893 - AO353_23735 0.32 -2.8
5,202,893 - AO353_23735 0.32 -0.6
5,202,925 - AO353_23735 0.36 -1.8
5,202,925 - AO353_23735 0.36 -1.9
5,203,078 + AO353_23735 0.52 +0.8
5,203,078 + AO353_23735 0.52 -0.4
5,203,141 + AO353_23735 0.58 -2.8
5,203,141 + AO353_23735 0.58 -1.4
5,203,141 + AO353_23735 0.58 -0.4
5,203,141 + AO353_23735 0.58 -2.0
5,203,141 + AO353_23735 0.58 +0.2
5,203,141 + AO353_23735 0.58 -0.8
5,203,141 + AO353_23735 0.58 +0.2
5,203,141 + AO353_23735 0.58 -1.4
5,203,142 - AO353_23735 0.58 -1.4
5,203,142 - AO353_23735 0.58 -1.9
5,203,142 - AO353_23735 0.58 -0.5
5,203,142 - AO353_23735 0.58 +0.0
5,203,142 - AO353_23735 0.58 +0.1
5,203,142 - AO353_23735 0.58 -1.5
5,203,142 - AO353_23735 0.58 +0.5
5,203,142 - AO353_23735 0.58 -0.8
5,203,142 - AO353_23735 0.58 -0.2
5,203,142 - AO353_23735 0.58 -2.0
5,203,145 + AO353_23735 0.59 -0.4
5,203,145 + AO353_23735 0.59 -2.4
5,203,146 - AO353_23735 0.59 -1.4
5,203,146 - AO353_23735 0.59 -0.8
5,203,146 - AO353_23735 0.59 -2.7
5,203,146 - AO353_23735 0.59 +0.2
5,203,603 + +0.6
5,203,604 - -1.1
5,203,608 + -2.4
5,203,609 - +0.1
5,203,767 - -0.6
5,203,797 + -0.2
5,203,797 + -1.0
5,203,862 + -0.4
5,203,862 + +0.5
5,203,863 - +1.4
5,203,863 - -0.8
5,203,863 - -0.8
5,203,863 - +1.8
5,203,863 - +1.5
5,203,863 - +2.0
5,203,863 - -0.1
5,203,863 - -2.1
5,203,863 - -0.2
5,203,863 - +0.2
5,203,863 - -0.8
5,203,892 + +0.2
5,203,892 + +0.2
5,203,893 - -0.6
5,203,907 + -0.2
5,203,907 + +0.5
5,203,907 + -0.8
5,203,908 - -1.1
5,203,908 - +0.8
5,203,908 - -0.3
5,203,926 + +0.7
5,203,926 + +0.7
5,203,927 - -0.0
5,203,958 - AO353_23740 0.13 +1.2
5,204,022 + AO353_23740 0.19 -0.4
5,204,022 + AO353_23740 0.19 +1.0
5,204,023 - AO353_23740 0.19 +0.1
5,204,023 - AO353_23740 0.19 -1.4
5,204,023 - AO353_23740 0.19 +1.0
5,204,031 + AO353_23740 0.20 -0.3
5,204,032 - AO353_23740 0.20 -0.5
5,204,032 - AO353_23740 0.20 -1.0
5,204,032 - AO353_23740 0.20 +1.3
5,204,054 + AO353_23740 0.22 +0.5
5,204,054 + AO353_23740 0.22 +0.6
5,204,054 + AO353_23740 0.22 +0.6
5,204,055 - AO353_23740 0.22 +0.7
5,204,055 - AO353_23740 0.22 -0.6
5,204,055 - AO353_23740 0.22 -0.1
5,204,055 - AO353_23740 0.22 -0.4
5,204,084 + AO353_23740 0.25 +0.2
5,204,084 + AO353_23740 0.25 -1.5
5,204,084 + AO353_23740 0.25 -0.0
5,204,084 + AO353_23740 0.25 +0.1
5,204,085 - AO353_23740 0.25 -0.8
5,204,085 - AO353_23740 0.25 -1.3
5,204,085 - AO353_23740 0.25 +0.6
5,204,085 - AO353_23740 0.25 +0.8
5,204,085 - AO353_23740 0.25 +1.2
5,204,085 - AO353_23740 0.25 +1.6
5,204,162 + AO353_23740 0.32 +1.0
5,204,178 + AO353_23740 0.34 +0.6
5,204,178 + AO353_23740 0.34 +1.0
5,204,179 - AO353_23740 0.34 -1.1
5,204,179 - AO353_23740 0.34 +1.2
5,204,181 + AO353_23740 0.34 +1.4
5,204,181 + AO353_23740 0.34 -2.6
5,204,182 - AO353_23740 0.34 -2.2
5,204,182 - AO353_23740 0.34 +0.7
5,204,182 - AO353_23740 0.34 -0.8
5,204,182 - AO353_23740 0.34 +0.6
5,204,182 - AO353_23740 0.34 -2.4
5,204,315 + AO353_23740 0.46 +1.1
5,204,385 - AO353_23740 0.53 -0.2
5,204,422 - AO353_23740 0.56 +0.8
5,204,422 - AO353_23740 0.56 +0.2
5,204,422 - AO353_23740 0.56 -1.4
5,204,481 + AO353_23740 0.62 -0.6
5,204,482 - AO353_23740 0.62 -0.3
5,204,533 - AO353_23740 0.67 -1.2

Or see this region's nucleotide sequence