Experiment: Choline chloride 358 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07805 and AO353_07810 are separated by 214 nucleotides AO353_07810 and AO353_07815 are separated by 185 nucleotides
AO353_07805: AO353_07805 - betaine-aldehyde dehydrogenase, at 1,720,555 to 1,722,027
_07805
AO353_07810: AO353_07810 - choline dehydrogenase, at 1,722,242 to 1,723,945
_07810
AO353_07815: AO353_07815 - hypothetical protein, at 1,724,131 to 1,725,114
_07815
Position (kb)
1722
1723
1724 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1721.392 kb on + strand, within AO353_07805 at 1721.392 kb on + strand, within AO353_07805 at 1721.392 kb on + strand, within AO353_07805 at 1721.393 kb on - strand, within AO353_07805 at 1721.393 kb on - strand, within AO353_07805 at 1721.393 kb on - strand, within AO353_07805 at 1721.393 kb on - strand, within AO353_07805 at 1721.393 kb on - strand, within AO353_07805 at 1721.520 kb on + strand, within AO353_07805 at 1721.520 kb on + strand, within AO353_07805 at 1721.572 kb on + strand, within AO353_07805 at 1721.572 kb on + strand, within AO353_07805 at 1721.572 kb on + strand, within AO353_07805 at 1721.586 kb on + strand, within AO353_07805 at 1721.586 kb on + strand, within AO353_07805 at 1721.587 kb on - strand, within AO353_07805 at 1721.587 kb on - strand, within AO353_07805 at 1721.746 kb on + strand, within AO353_07805 at 1721.746 kb on + strand, within AO353_07805 at 1721.746 kb on + strand, within AO353_07805 at 1721.747 kb on - strand, within AO353_07805 at 1721.747 kb on - strand, within AO353_07805 at 1721.747 kb on - strand, within AO353_07805 at 1721.747 kb on - strand, within AO353_07805 at 1721.865 kb on + strand, within AO353_07805 at 1721.920 kb on + strand at 1722.254 kb on + strand at 1722.255 kb on - strand at 1722.255 kb on - strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.260 kb on + strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.261 kb on - strand at 1722.369 kb on + strand at 1722.369 kb on + strand at 1722.425 kb on + strand, within AO353_07810 at 1722.426 kb on - strand, within AO353_07810 at 1722.438 kb on - strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.533 kb on + strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.534 kb on - strand, within AO353_07810 at 1722.557 kb on + strand, within AO353_07810 at 1722.557 kb on + strand, within AO353_07810 at 1722.558 kb on - strand, within AO353_07810 at 1722.558 kb on - strand, within AO353_07810 at 1722.599 kb on + strand, within AO353_07810 at 1722.599 kb on + strand, within AO353_07810 at 1722.599 kb on + strand, within AO353_07810 at 1722.599 kb on + strand, within AO353_07810 at 1722.600 kb on - strand, within AO353_07810 at 1722.617 kb on + strand, within AO353_07810 at 1722.618 kb on - strand, within AO353_07810 at 1722.659 kb on + strand, within AO353_07810 at 1722.659 kb on + strand, within AO353_07810 at 1722.697 kb on + strand, within AO353_07810 at 1722.697 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.744 kb on + strand, within AO353_07810 at 1722.745 kb on - strand, within AO353_07810 at 1722.745 kb on - strand, within AO353_07810 at 1722.745 kb on - strand, within AO353_07810 at 1722.745 kb on - strand, within AO353_07810 at 1722.745 kb on - strand, within AO353_07810 at 1722.745 kb on - strand, within AO353_07810 at 1722.827 kb on - strand, within AO353_07810 at 1722.951 kb on + strand, within AO353_07810 at 1722.951 kb on + strand, within AO353_07810 at 1722.951 kb on + strand, within AO353_07810 at 1722.951 kb on + strand, within AO353_07810 at 1722.952 kb on - strand, within AO353_07810 at 1722.952 kb on - strand, within AO353_07810 at 1722.952 kb on - strand, within AO353_07810 at 1722.952 kb on - strand, within AO353_07810 at 1722.956 kb on + strand, within AO353_07810 at 1723.154 kb on + strand, within AO353_07810 at 1723.154 kb on + strand, within AO353_07810 at 1723.154 kb on + strand, within AO353_07810 at 1723.155 kb on - strand, within AO353_07810 at 1723.155 kb on - strand, within AO353_07810 at 1723.163 kb on + strand, within AO353_07810 at 1723.164 kb on - strand, within AO353_07810 at 1723.164 kb on - strand, within AO353_07810 at 1723.188 kb on + strand, within AO353_07810 at 1723.208 kb on + strand, within AO353_07810 at 1723.208 kb on + strand, within AO353_07810 at 1723.209 kb on - strand, within AO353_07810 at 1723.355 kb on - strand, within AO353_07810 at 1723.355 kb on - strand, within AO353_07810 at 1723.355 kb on - strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.358 kb on + strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.359 kb on - strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.487 kb on + strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.488 kb on - strand, within AO353_07810 at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.877 kb on + strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.878 kb on - strand at 1723.880 kb on + strand at 1723.880 kb on + strand at 1723.881 kb on - strand at 1723.881 kb on - strand at 1723.881 kb on - strand at 1723.881 kb on - strand at 1723.881 kb on - strand at 1723.943 kb on + strand at 1723.943 kb on + strand at 1723.966 kb on + strand at 1723.966 kb on + strand at 1723.966 kb on + strand at 1723.967 kb on - strand at 1723.967 kb on - strand at 1723.967 kb on - strand at 1724.010 kb on - strand at 1724.025 kb on + strand at 1724.148 kb on - strand at 1724.320 kb on + strand, within AO353_07815 at 1724.321 kb on - strand, within AO353_07815 at 1724.368 kb on - strand, within AO353_07815 at 1724.435 kb on + strand, within AO353_07815 at 1724.454 kb on + strand, within AO353_07815 at 1724.465 kb on - strand, within AO353_07815 at 1724.563 kb on + strand, within AO353_07815 at 1724.563 kb on + strand, within AO353_07815 at 1724.563 kb on + strand, within AO353_07815 at 1724.564 kb on - strand, within AO353_07815 at 1724.564 kb on - strand, within AO353_07815 at 1724.564 kb on - strand, within AO353_07815 at 1724.579 kb on + strand, within AO353_07815 at 1724.579 kb on + strand, within AO353_07815 at 1724.580 kb on - strand, within AO353_07815 at 1724.580 kb on - strand, within AO353_07815 at 1724.585 kb on - strand, within AO353_07815 at 1724.585 kb on - strand, within AO353_07815 at 1724.633 kb on - strand, within AO353_07815 at 1724.635 kb on + strand, within AO353_07815 at 1724.764 kb on + strand, within AO353_07815 at 1724.776 kb on + strand, within AO353_07815 at 1724.776 kb on + strand, within AO353_07815 at 1724.776 kb on + strand, within AO353_07815 at 1724.776 kb on + strand, within AO353_07815 at 1724.777 kb on - strand, within AO353_07815 at 1724.777 kb on - strand, within AO353_07815 at 1724.777 kb on - strand, within AO353_07815 at 1724.777 kb on - strand, within AO353_07815 at 1724.777 kb on - strand, within AO353_07815 at 1724.818 kb on - strand, within AO353_07815 at 1724.858 kb on + strand, within AO353_07815 at 1724.858 kb on + strand, within AO353_07815 at 1724.858 kb on + strand, within AO353_07815 at 1724.858 kb on + strand, within AO353_07815 at 1724.859 kb on - strand, within AO353_07815 at 1724.870 kb on + strand, within AO353_07815 at 1724.871 kb on - strand, within AO353_07815
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 358 mM remove 1,721,392 + AO353_07805 0.57 -2.5 1,721,392 + AO353_07805 0.57 -2.3 1,721,392 + AO353_07805 0.57 -1.2 1,721,393 - AO353_07805 0.57 -0.9 1,721,393 - AO353_07805 0.57 -1.2 1,721,393 - AO353_07805 0.57 -0.7 1,721,393 - AO353_07805 0.57 -2.6 1,721,393 - AO353_07805 0.57 -3.3 1,721,520 + AO353_07805 0.66 -0.5 1,721,520 + AO353_07805 0.66 +0.1 1,721,572 + AO353_07805 0.69 -0.7 1,721,572 + AO353_07805 0.69 -3.1 1,721,572 + AO353_07805 0.69 -0.2 1,721,586 + AO353_07805 0.70 -1.5 1,721,586 + AO353_07805 0.70 -1.5 1,721,587 - AO353_07805 0.70 -1.9 1,721,587 - AO353_07805 0.70 +0.6 1,721,746 + AO353_07805 0.81 -0.5 1,721,746 + AO353_07805 0.81 -1.2 1,721,746 + AO353_07805 0.81 -1.5 1,721,747 - AO353_07805 0.81 -0.5 1,721,747 - AO353_07805 0.81 -1.2 1,721,747 - AO353_07805 0.81 -1.5 1,721,747 - AO353_07805 0.81 +0.5 1,721,865 + AO353_07805 0.89 -1.8 1,721,920 + -1.1 1,722,254 + +0.1 1,722,255 - -1.3 1,722,255 - -3.0 1,722,260 + -1.5 1,722,260 + -0.5 1,722,260 + -1.6 1,722,260 + -1.7 1,722,260 + -0.9 1,722,260 + -0.9 1,722,260 + -0.9 1,722,260 + -1.3 1,722,260 + -0.5 1,722,260 + -0.9 1,722,260 + -1.3 1,722,260 + -0.6 1,722,260 + +0.7 1,722,260 + -2.5 1,722,260 + +0.1 1,722,261 - -2.6 1,722,261 - -0.5 1,722,261 - -2.8 1,722,261 - +0.3 1,722,261 - -2.2 1,722,261 - -3.3 1,722,261 - -1.2 1,722,261 - -1.7 1,722,261 - -2.1 1,722,261 - +0.5 1,722,261 - -3.6 1,722,261 - -1.7 1,722,369 + -1.1 1,722,369 + +2.1 1,722,425 + AO353_07810 0.11 -1.8 1,722,426 - AO353_07810 0.11 -2.7 1,722,438 - AO353_07810 0.12 -3.6 1,722,533 + AO353_07810 0.17 -1.2 1,722,533 + AO353_07810 0.17 -1.2 1,722,533 + AO353_07810 0.17 -1.9 1,722,533 + AO353_07810 0.17 -2.1 1,722,533 + AO353_07810 0.17 -1.9 1,722,533 + AO353_07810 0.17 -0.5 1,722,533 + AO353_07810 0.17 -1.8 1,722,533 + AO353_07810 0.17 -0.3 1,722,533 + AO353_07810 0.17 -1.6 1,722,533 + AO353_07810 0.17 -2.3 1,722,533 + AO353_07810 0.17 -2.2 1,722,533 + AO353_07810 0.17 -1.2 1,722,533 + AO353_07810 0.17 -1.0 1,722,534 - AO353_07810 0.17 -1.5 1,722,534 - AO353_07810 0.17 -2.3 1,722,534 - AO353_07810 0.17 -0.5 1,722,534 - AO353_07810 0.17 -1.4 1,722,534 - AO353_07810 0.17 +2.1 1,722,534 - AO353_07810 0.17 -2.7 1,722,534 - AO353_07810 0.17 -1.8 1,722,534 - AO353_07810 0.17 -3.0 1,722,534 - AO353_07810 0.17 +0.3 1,722,534 - AO353_07810 0.17 -1.1 1,722,534 - AO353_07810 0.17 -2.9 1,722,557 + AO353_07810 0.18 -1.2 1,722,557 + AO353_07810 0.18 -1.5 1,722,558 - AO353_07810 0.19 -1.7 1,722,558 - AO353_07810 0.19 -2.3 1,722,599 + AO353_07810 0.21 -1.5 1,722,599 + AO353_07810 0.21 -1.2 1,722,599 + AO353_07810 0.21 -1.1 1,722,599 + AO353_07810 0.21 +0.7 1,722,600 - AO353_07810 0.21 -1.5 1,722,617 + AO353_07810 0.22 -0.7 1,722,618 - AO353_07810 0.22 -1.9 1,722,659 + AO353_07810 0.24 -1.9 1,722,659 + AO353_07810 0.24 -1.5 1,722,697 + AO353_07810 0.27 -1.2 1,722,697 + AO353_07810 0.27 +0.1 1,722,744 + AO353_07810 0.29 -1.7 1,722,744 + AO353_07810 0.29 -1.3 1,722,744 + AO353_07810 0.29 -1.5 1,722,744 + AO353_07810 0.29 -1.1 1,722,744 + AO353_07810 0.29 -3.1 1,722,744 + AO353_07810 0.29 -2.6 1,722,744 + AO353_07810 0.29 -1.5 1,722,745 - AO353_07810 0.30 +1.9 1,722,745 - AO353_07810 0.30 -1.2 1,722,745 - AO353_07810 0.30 -2.2 1,722,745 - AO353_07810 0.30 -2.6 1,722,745 - AO353_07810 0.30 -2.9 1,722,745 - AO353_07810 0.30 -0.2 1,722,827 - AO353_07810 0.34 -0.3 1,722,951 + AO353_07810 0.42 -2.1 1,722,951 + AO353_07810 0.42 -1.8 1,722,951 + AO353_07810 0.42 -1.3 1,722,951 + AO353_07810 0.42 -2.3 1,722,952 - AO353_07810 0.42 -2.8 1,722,952 - AO353_07810 0.42 -1.4 1,722,952 - AO353_07810 0.42 -2.8 1,722,952 - AO353_07810 0.42 -0.5 1,722,956 + AO353_07810 0.42 -2.2 1,723,154 + AO353_07810 0.54 -2.2 1,723,154 + AO353_07810 0.54 -1.9 1,723,154 + AO353_07810 0.54 -1.5 1,723,155 - AO353_07810 0.54 -1.7 1,723,155 - AO353_07810 0.54 -1.7 1,723,163 + AO353_07810 0.54 +0.1 1,723,164 - AO353_07810 0.54 -0.1 1,723,164 - AO353_07810 0.54 -0.9 1,723,188 + AO353_07810 0.56 -0.8 1,723,208 + AO353_07810 0.57 -3.8 1,723,208 + AO353_07810 0.57 -0.9 1,723,209 - AO353_07810 0.57 -1.3 1,723,355 - AO353_07810 0.65 -1.7 1,723,355 - AO353_07810 0.65 -2.6 1,723,355 - AO353_07810 0.65 -1.5 1,723,358 + AO353_07810 0.65 -1.7 1,723,358 + AO353_07810 0.65 -1.3 1,723,358 + AO353_07810 0.65 -1.4 1,723,358 + AO353_07810 0.65 -1.6 1,723,358 + AO353_07810 0.65 -2.2 1,723,358 + AO353_07810 0.65 -0.8 1,723,358 + AO353_07810 0.65 -1.7 1,723,359 - AO353_07810 0.66 -0.2 1,723,359 - AO353_07810 0.66 -0.7 1,723,359 - AO353_07810 0.66 -1.7 1,723,359 - AO353_07810 0.66 +0.6 1,723,359 - AO353_07810 0.66 -1.5 1,723,359 - AO353_07810 0.66 -2.0 1,723,359 - AO353_07810 0.66 -0.9 1,723,359 - AO353_07810 0.66 +0.1 1,723,359 - AO353_07810 0.66 -1.9 1,723,359 - AO353_07810 0.66 +0.0 1,723,487 + AO353_07810 0.73 -1.6 1,723,487 + AO353_07810 0.73 -0.9 1,723,487 + AO353_07810 0.73 -1.3 1,723,487 + AO353_07810 0.73 -0.5 1,723,487 + AO353_07810 0.73 +0.7 1,723,487 + AO353_07810 0.73 -1.5 1,723,487 + AO353_07810 0.73 -3.1 1,723,487 + AO353_07810 0.73 -1.2 1,723,487 + AO353_07810 0.73 -0.9 1,723,487 + AO353_07810 0.73 -0.7 1,723,488 - AO353_07810 0.73 +0.1 1,723,488 - AO353_07810 0.73 -2.3 1,723,488 - AO353_07810 0.73 -1.2 1,723,488 - AO353_07810 0.73 -0.9 1,723,488 - AO353_07810 0.73 -2.6 1,723,488 - AO353_07810 0.73 -2.1 1,723,488 - AO353_07810 0.73 -1.1 1,723,488 - AO353_07810 0.73 -1.3 1,723,877 + -0.9 1,723,877 + -1.7 1,723,877 + -2.1 1,723,877 + -1.7 1,723,877 + -0.9 1,723,877 + -1.6 1,723,877 + -1.5 1,723,877 + -2.6 1,723,878 - -2.7 1,723,878 - -1.2 1,723,878 - -2.3 1,723,878 - -0.5 1,723,878 - -0.7 1,723,878 - -2.6 1,723,878 - -1.1 1,723,878 - -2.3 1,723,878 - -1.7 1,723,878 - -0.5 1,723,880 + -0.2 1,723,880 + -1.1 1,723,881 - -1.9 1,723,881 - -0.9 1,723,881 - -1.9 1,723,881 - -1.7 1,723,881 - -2.6 1,723,943 + -0.9 1,723,943 + -1.1 1,723,966 + -1.2 1,723,966 + +0.2 1,723,966 + -1.3 1,723,967 - +1.8 1,723,967 - +0.8 1,723,967 - -1.0 1,724,010 - -0.5 1,724,025 + -1.0 1,724,148 - +1.1 1,724,320 + AO353_07815 0.19 -0.8 1,724,321 - AO353_07815 0.19 +1.1 1,724,368 - AO353_07815 0.24 +0.4 1,724,435 + AO353_07815 0.31 +0.6 1,724,454 + AO353_07815 0.33 -0.5 1,724,465 - AO353_07815 0.34 +0.3 1,724,563 + AO353_07815 0.44 -0.6 1,724,563 + AO353_07815 0.44 -1.7 1,724,563 + AO353_07815 0.44 +1.4 1,724,564 - AO353_07815 0.44 +1.4 1,724,564 - AO353_07815 0.44 +0.5 1,724,564 - AO353_07815 0.44 -1.2 1,724,579 + AO353_07815 0.46 +0.5 1,724,579 + AO353_07815 0.46 +0.8 1,724,580 - AO353_07815 0.46 -0.9 1,724,580 - AO353_07815 0.46 -0.9 1,724,585 - AO353_07815 0.46 +1.3 1,724,585 - AO353_07815 0.46 -0.1 1,724,633 - AO353_07815 0.51 -0.2 1,724,635 + AO353_07815 0.51 -2.9 1,724,764 + AO353_07815 0.64 -0.5 1,724,776 + AO353_07815 0.66 +1.1 1,724,776 + AO353_07815 0.66 +1.0 1,724,776 + AO353_07815 0.66 -0.6 1,724,776 + AO353_07815 0.66 +0.8 1,724,777 - AO353_07815 0.66 +0.6 1,724,777 - AO353_07815 0.66 -1.4 1,724,777 - AO353_07815 0.66 -1.0 1,724,777 - AO353_07815 0.66 -0.5 1,724,777 - AO353_07815 0.66 +0.3 1,724,818 - AO353_07815 0.70 -0.8 1,724,858 + AO353_07815 0.74 -2.8 1,724,858 + AO353_07815 0.74 +0.1 1,724,858 + AO353_07815 0.74 -1.7 1,724,858 + AO353_07815 0.74 +0.1 1,724,859 - AO353_07815 0.74 +0.6 1,724,870 + AO353_07815 0.75 -0.9 1,724,871 - AO353_07815 0.75 +0.3
Or see this region's nucleotide sequence