Experiment: Choline chloride 358 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04000 and AO353_04005 are separated by 100 nucleotides AO353_04005 and AO353_04010 are separated by 2 nucleotides AO353_04010 and AO353_04015 are separated by 125 nucleotides
AO353_04000: AO353_04000 - acriflavine resistance protein B, at 859,573 to 862,599
_04000
AO353_04005: AO353_04005 - hypothetical protein, at 862,700 to 862,930
_04005
AO353_04010: AO353_04010 - InaA protein, at 862,933 to 863,646
_04010
AO353_04015: AO353_04015 - histidine kinase, at 863,772 to 865,052
_04015
Position (kb) 862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 861.799 kb on + strand, within AO353_04000 at 861.799 kb on + strand, within AO353_04000 at 861.799 kb on + strand, within AO353_04000 at 861.799 kb on + strand, within AO353_04000 at 861.799 kb on + strand, within AO353_04000 at 861.800 kb on - strand, within AO353_04000 at 861.800 kb on - strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.860 kb on - strand, within AO353_04000 at 861.860 kb on - strand, within AO353_04000 at 861.860 kb on - strand, within AO353_04000 at 861.860 kb on - strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.868 kb on - strand, within AO353_04000 at 862.054 kb on + strand, within AO353_04000 at 862.054 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.567 kb on + strand at 862.567 kb on + strand at 862.567 kb on + strand at 862.567 kb on + strand at 862.567 kb on + strand at 862.568 kb on - strand at 862.568 kb on - strand at 862.568 kb on - strand at 862.568 kb on - strand at 862.568 kb on - strand at 862.568 kb on - strand at 862.568 kb on - strand at 862.597 kb on + strand at 862.597 kb on + strand at 862.598 kb on - strand at 862.601 kb on + strand at 862.601 kb on + strand at 862.602 kb on - strand at 862.602 kb on - strand at 862.789 kb on + strand, within AO353_04005 at 862.789 kb on + strand, within AO353_04005 at 862.843 kb on + strand, within AO353_04005 at 862.843 kb on + strand, within AO353_04005 at 862.843 kb on + strand, within AO353_04005 at 862.843 kb on + strand, within AO353_04005 at 862.843 kb on + strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.904 kb on + strand, within AO353_04005 at 862.912 kb on + strand at 862.923 kb on - strand at 862.935 kb on - strand at 862.947 kb on + strand at 862.947 kb on + strand at 862.947 kb on + strand at 862.948 kb on - strand at 862.948 kb on - strand at 862.968 kb on + strand at 862.969 kb on - strand at 862.970 kb on + strand at 862.971 kb on - strand at 862.976 kb on + strand at 862.976 kb on + strand at 862.976 kb on + strand at 862.976 kb on + strand at 862.976 kb on + strand at 862.976 kb on + strand at 862.977 kb on - strand at 862.977 kb on - strand at 862.977 kb on - strand at 862.977 kb on - strand at 862.977 kb on - strand at 863.154 kb on + strand, within AO353_04010 at 863.154 kb on + strand, within AO353_04010 at 863.154 kb on + strand, within AO353_04010 at 863.154 kb on + strand, within AO353_04010 at 863.155 kb on - strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.167 kb on - strand, within AO353_04010 at 863.167 kb on - strand, within AO353_04010 at 863.167 kb on - strand, within AO353_04010 at 863.167 kb on - strand, within AO353_04010 at 863.167 kb on - strand, within AO353_04010 at 863.167 kb on - strand, within AO353_04010 at 863.271 kb on - strand, within AO353_04010 at 863.271 kb on - strand, within AO353_04010 at 863.271 kb on - strand, within AO353_04010 at 863.422 kb on + strand, within AO353_04010 at 863.422 kb on + strand, within AO353_04010 at 863.422 kb on + strand, within AO353_04010 at 863.422 kb on + strand, within AO353_04010 at 863.422 kb on + strand, within AO353_04010 at 863.422 kb on + strand, within AO353_04010 at 863.423 kb on - strand, within AO353_04010 at 863.423 kb on - strand, within AO353_04010 at 863.423 kb on - strand, within AO353_04010 at 863.423 kb on - strand, within AO353_04010 at 863.458 kb on - strand, within AO353_04010 at 863.458 kb on - strand, within AO353_04010 at 863.462 kb on + strand, within AO353_04010 at 863.463 kb on - strand, within AO353_04010 at 863.463 kb on - strand, within AO353_04010 at 863.463 kb on - strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.476 kb on + strand, within AO353_04010 at 863.490 kb on - strand, within AO353_04010 at 863.490 kb on - strand, within AO353_04010 at 863.525 kb on - strand, within AO353_04010 at 863.525 kb on - strand, within AO353_04010 at 863.591 kb on + strand at 863.592 kb on - strand at 863.592 kb on - strand at 863.592 kb on - strand at 863.652 kb on + strand at 863.652 kb on + strand at 863.653 kb on - strand at 863.653 kb on - strand at 863.653 kb on - strand at 863.653 kb on - strand at 863.653 kb on - strand at 863.663 kb on + strand at 863.663 kb on + strand at 863.664 kb on - strand at 863.666 kb on + strand at 863.666 kb on + strand at 863.666 kb on + strand at 863.666 kb on + strand at 863.667 kb on - strand at 863.667 kb on - strand at 863.667 kb on - strand at 863.667 kb on - strand at 863.667 kb on - strand at 863.667 kb on - strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.670 kb on + strand at 863.670 kb on + strand at 863.670 kb on + strand at 863.670 kb on + strand at 863.670 kb on + strand at 863.671 kb on - strand at 863.671 kb on - strand at 863.671 kb on - strand at 863.671 kb on - strand at 863.671 kb on - strand at 863.688 kb on + strand at 863.688 kb on + strand at 863.689 kb on - strand at 863.699 kb on - strand at 863.750 kb on + strand at 863.750 kb on + strand at 863.750 kb on + strand at 863.750 kb on + strand at 863.750 kb on + strand at 863.751 kb on - strand at 863.751 kb on - strand at 863.751 kb on - strand at 863.751 kb on - strand at 863.751 kb on - strand at 863.800 kb on + strand at 863.800 kb on + strand at 863.801 kb on - strand at 863.801 kb on - strand at 863.801 kb on - strand at 863.922 kb on + strand, within AO353_04015 at 863.922 kb on + strand, within AO353_04015 at 863.922 kb on + strand, within AO353_04015 at 863.923 kb on - strand, within AO353_04015
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 358 mM remove 861,799 + AO353_04000 0.74 -0.6 861,799 + AO353_04000 0.74 -0.3 861,799 + AO353_04000 0.74 -0.6 861,799 + AO353_04000 0.74 +0.0 861,799 + AO353_04000 0.74 -0.1 861,800 - AO353_04000 0.74 -1.8 861,800 - AO353_04000 0.74 -0.3 861,859 + AO353_04000 0.76 -0.8 861,859 + AO353_04000 0.76 -0.2 861,859 + AO353_04000 0.76 -0.3 861,859 + AO353_04000 0.76 -0.5 861,859 + AO353_04000 0.76 -1.1 861,859 + AO353_04000 0.76 +0.1 861,859 + AO353_04000 0.76 -0.1 861,859 + AO353_04000 0.76 -0.7 861,859 + AO353_04000 0.76 +0.0 861,859 + AO353_04000 0.76 -0.4 861,859 + AO353_04000 0.76 -0.7 861,860 - AO353_04000 0.76 -0.3 861,860 - AO353_04000 0.76 -0.9 861,860 - AO353_04000 0.76 +0.7 861,860 - AO353_04000 0.76 +0.7 861,862 + AO353_04000 0.76 +0.7 861,862 + AO353_04000 0.76 +0.3 861,862 + AO353_04000 0.76 +0.2 861,862 + AO353_04000 0.76 -0.1 861,862 + AO353_04000 0.76 -0.2 861,862 + AO353_04000 0.76 -0.4 861,862 + AO353_04000 0.76 -0.3 861,862 + AO353_04000 0.76 +0.3 861,862 + AO353_04000 0.76 -0.4 861,863 - AO353_04000 0.76 +1.5 861,863 - AO353_04000 0.76 -0.3 861,863 - AO353_04000 0.76 -1.0 861,863 - AO353_04000 0.76 -0.4 861,863 - AO353_04000 0.76 -0.8 861,863 - AO353_04000 0.76 +0.1 861,863 - AO353_04000 0.76 -1.1 861,863 - AO353_04000 0.76 +1.2 861,863 - AO353_04000 0.76 -0.3 861,863 - AO353_04000 0.76 +1.3 861,863 - AO353_04000 0.76 +0.3 861,863 - AO353_04000 0.76 -1.3 861,863 - AO353_04000 0.76 +0.2 861,868 - AO353_04000 0.76 +0.2 862,054 + AO353_04000 0.82 -1.8 862,054 + AO353_04000 0.82 -0.8 862,267 + AO353_04000 0.89 +0.0 862,267 + AO353_04000 0.89 -3.0 862,267 + AO353_04000 0.89 +0.1 862,267 + AO353_04000 0.89 +2.3 862,267 + AO353_04000 0.89 +2.7 862,267 + AO353_04000 0.89 +1.2 862,267 + AO353_04000 0.89 +1.9 862,267 + AO353_04000 0.89 -0.4 862,267 + AO353_04000 0.89 -0.7 862,268 - AO353_04000 0.89 +0.7 862,268 - AO353_04000 0.89 -0.7 862,268 - AO353_04000 0.89 +0.1 862,268 - AO353_04000 0.89 -0.3 862,268 - AO353_04000 0.89 +0.4 862,268 - AO353_04000 0.89 -1.1 862,268 - AO353_04000 0.89 -0.6 862,567 + -0.6 862,567 + -0.6 862,567 + +0.0 862,567 + -2.1 862,567 + -1.1 862,568 - -1.1 862,568 - -0.1 862,568 - +1.7 862,568 - -0.6 862,568 - -0.3 862,568 - -1.4 862,568 - +0.3 862,597 + +0.5 862,597 + -0.3 862,598 - +0.2 862,601 + -0.3 862,601 + +1.7 862,602 - +0.0 862,602 - +0.0 862,789 + AO353_04005 0.39 -0.4 862,789 + AO353_04005 0.39 -0.6 862,843 + AO353_04005 0.62 -0.7 862,843 + AO353_04005 0.62 -2.4 862,843 + AO353_04005 0.62 -0.3 862,843 + AO353_04005 0.62 -0.1 862,843 + AO353_04005 0.62 -1.1 862,844 - AO353_04005 0.62 -0.3 862,844 - AO353_04005 0.62 -0.7 862,844 - AO353_04005 0.62 -0.3 862,844 - AO353_04005 0.62 -0.4 862,844 - AO353_04005 0.62 -0.5 862,844 - AO353_04005 0.62 -1.3 862,844 - AO353_04005 0.62 -0.3 862,904 + AO353_04005 0.88 -0.3 862,912 + -1.6 862,923 - +0.7 862,935 - -0.3 862,947 + -0.3 862,947 + +0.3 862,947 + -0.3 862,948 - -1.2 862,948 - -0.1 862,968 + -0.3 862,969 - -1.1 862,970 + +0.3 862,971 - +0.4 862,976 + -1.8 862,976 + +1.7 862,976 + -0.1 862,976 + -0.3 862,976 + -0.7 862,976 + -0.6 862,977 - -1.1 862,977 - -0.1 862,977 - -0.1 862,977 - +0.2 862,977 - -1.8 863,154 + AO353_04010 0.31 +0.3 863,154 + AO353_04010 0.31 +0.7 863,154 + AO353_04010 0.31 +2.0 863,154 + AO353_04010 0.31 -0.6 863,155 - AO353_04010 0.31 -0.8 863,156 + AO353_04010 0.31 -1.0 863,156 + AO353_04010 0.31 +1.5 863,156 + AO353_04010 0.31 +1.2 863,156 + AO353_04010 0.31 +0.0 863,156 + AO353_04010 0.31 -0.3 863,156 + AO353_04010 0.31 +1.7 863,156 + AO353_04010 0.31 -0.5 863,156 + AO353_04010 0.31 -0.8 863,156 + AO353_04010 0.31 -0.8 863,157 - AO353_04010 0.31 -0.4 863,157 - AO353_04010 0.31 +1.3 863,157 - AO353_04010 0.31 -0.4 863,157 - AO353_04010 0.31 -0.6 863,157 - AO353_04010 0.31 +1.0 863,157 - AO353_04010 0.31 -0.2 863,157 - +1.7 863,157 - AO353_04010 0.31 +0.5 863,157 - AO353_04010 0.31 -0.1 863,157 - AO353_04010 0.31 -1.3 863,157 - AO353_04010 0.31 -1.7 863,157 - AO353_04010 0.31 +1.2 863,166 + AO353_04010 0.33 -1.3 863,166 + AO353_04010 0.33 -0.4 863,166 + AO353_04010 0.33 +0.7 863,166 + AO353_04010 0.33 -1.3 863,166 + AO353_04010 0.33 -0.7 863,166 + AO353_04010 0.33 +0.6 863,166 + AO353_04010 0.33 +1.6 863,166 + AO353_04010 0.33 -0.8 863,166 + AO353_04010 0.33 +0.3 863,167 - AO353_04010 0.33 +0.7 863,167 - AO353_04010 0.33 +1.0 863,167 - AO353_04010 0.33 +1.1 863,167 - AO353_04010 0.33 -0.8 863,167 - AO353_04010 0.33 +0.6 863,167 - AO353_04010 0.33 +0.4 863,271 - AO353_04010 0.47 -1.1 863,271 - AO353_04010 0.47 +0.4 863,271 - AO353_04010 0.47 -1.4 863,422 + AO353_04010 0.68 +1.3 863,422 + AO353_04010 0.68 -0.6 863,422 + AO353_04010 0.68 -0.6 863,422 + AO353_04010 0.68 -0.6 863,422 + AO353_04010 0.68 +1.7 863,422 + AO353_04010 0.68 +1.6 863,423 - AO353_04010 0.69 -0.5 863,423 - AO353_04010 0.69 +0.0 863,423 - AO353_04010 0.69 +0.5 863,423 - AO353_04010 0.69 +1.7 863,458 - AO353_04010 0.74 -0.6 863,458 - AO353_04010 0.74 +1.2 863,462 + AO353_04010 0.74 -0.5 863,463 - AO353_04010 0.74 -0.0 863,463 - AO353_04010 0.74 +0.2 863,463 - AO353_04010 0.74 -0.5 863,466 + AO353_04010 0.75 -0.7 863,466 + AO353_04010 0.75 +1.3 863,466 + AO353_04010 0.75 -0.1 863,466 + AO353_04010 0.75 -0.1 863,466 + AO353_04010 0.75 -0.3 863,466 + AO353_04010 0.75 +0.7 863,466 + AO353_04010 0.75 +1.7 863,467 - AO353_04010 0.75 +0.0 863,467 - AO353_04010 0.75 +2.9 863,467 - AO353_04010 0.75 +0.2 863,467 - AO353_04010 0.75 +1.3 863,467 - AO353_04010 0.75 -0.8 863,467 - AO353_04010 0.75 -0.3 863,467 - AO353_04010 0.75 +0.2 863,476 + AO353_04010 0.76 +0.7 863,490 - AO353_04010 0.78 +0.2 863,490 - AO353_04010 0.78 +1.6 863,525 - AO353_04010 0.83 -0.7 863,525 - AO353_04010 0.83 +1.4 863,591 + +0.0 863,592 - +2.1 863,592 - +0.7 863,592 - -0.3 863,652 + +0.3 863,652 + -0.0 863,653 - -0.8 863,653 - +1.0 863,653 - -0.4 863,653 - +0.1 863,653 - +0.9 863,663 + +0.5 863,663 + -0.0 863,664 - -2.4 863,666 + +0.4 863,666 + -0.8 863,666 + +0.1 863,666 + +0.3 863,667 - +0.5 863,667 - +0.7 863,667 - -0.9 863,667 - +0.7 863,667 - +0.6 863,667 - -0.3 863,668 + -0.2 863,668 + +0.4 863,668 + -0.8 863,668 + -0.8 863,668 + +0.5 863,668 + +0.4 863,668 + +0.4 863,668 + +1.6 863,669 - +0.3 863,669 - +0.3 863,669 - +0.2 863,669 - +1.6 863,669 - -0.4 863,669 - -0.1 863,669 - -0.6 863,669 - +0.2 863,669 - +1.0 863,669 - +0.2 863,669 - -1.2 863,670 + -1.1 863,670 + -0.6 863,670 + +0.7 863,670 + -0.7 863,670 + -0.8 863,671 - +0.7 863,671 - -0.3 863,671 - +0.2 863,671 - +0.2 863,671 - -0.1 863,688 + -1.4 863,688 + +0.2 863,689 - +1.2 863,699 - +0.7 863,750 + +2.0 863,750 + -0.1 863,750 + -0.8 863,750 + -0.3 863,750 + -0.8 863,751 - -0.9 863,751 - -0.0 863,751 - +1.2 863,751 - +0.7 863,751 - +1.6 863,800 + +0.9 863,800 + -0.3 863,801 - -1.8 863,801 - -1.6 863,801 - +2.3 863,922 + AO353_04015 0.12 +0.0 863,922 + AO353_04015 0.12 +0.3 863,922 + AO353_04015 0.12 -0.6 863,923 - AO353_04015 0.12 +0.5
Or see this region's nucleotide sequence