Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03875

Experiment: Choline chloride 358 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03870 and AO353_03875 are separated by 75 nucleotidesAO353_03875 and AO353_03880 are separated by 227 nucleotides AO353_03870: AO353_03870 - LysR family transcriptional regulator, at 827,924 to 828,805 _03870 AO353_03875: AO353_03875 - 3-beta hydroxysteroid dehydrogenase, at 828,881 to 829,495 _03875 AO353_03880: AO353_03880 - MBL fold metallo-hydrolase, at 829,723 to 830,607 _03880 Position (kb) 828 829 830Strain fitness (log2 ratio) -2 -1 0 1 2 3at 827.888 kb on + strandat 827.889 kb on - strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.923 kb on + strandat 827.924 kb on - strandat 827.924 kb on - strandat 827.924 kb on - strandat 828.068 kb on + strand, within AO353_03870at 828.353 kb on + strand, within AO353_03870at 828.353 kb on + strand, within AO353_03870at 828.353 kb on + strand, within AO353_03870at 828.353 kb on + strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.354 kb on - strand, within AO353_03870at 828.586 kb on - strand, within AO353_03870at 828.716 kb on + strand, within AO353_03870at 828.716 kb on + strand, within AO353_03870at 828.719 kb on + strandat 828.719 kb on + strandat 828.719 kb on + strandat 828.720 kb on - strandat 828.720 kb on - strandat 828.720 kb on - strandat 828.832 kb on - strandat 828.832 kb on - strandat 828.832 kb on - strandat 828.872 kb on + strandat 828.872 kb on + strandat 828.872 kb on + strandat 828.872 kb on + strandat 828.873 kb on - strandat 828.873 kb on - strandat 828.885 kb on + strandat 828.885 kb on + strandat 828.885 kb on + strandat 828.911 kb on - strandat 829.027 kb on + strand, within AO353_03875at 829.108 kb on - strand, within AO353_03875at 829.108 kb on - strand, within AO353_03875at 829.108 kb on - strand, within AO353_03875at 829.108 kb on - strand, within AO353_03875at 829.137 kb on + strand, within AO353_03875at 829.137 kb on + strand, within AO353_03875at 829.137 kb on + strand, within AO353_03875at 829.137 kb on + strand, within AO353_03875at 829.137 kb on + strand, within AO353_03875at 829.138 kb on - strand, within AO353_03875at 829.138 kb on - strand, within AO353_03875at 829.138 kb on - strand, within AO353_03875at 829.138 kb on - strand, within AO353_03875at 829.217 kb on + strand, within AO353_03875at 829.218 kb on - strand, within AO353_03875at 829.515 kb on + strandat 829.515 kb on + strandat 829.515 kb on + strandat 829.515 kb on + strandat 829.516 kb on - strandat 829.516 kb on - strandat 829.516 kb on - strandat 829.611 kb on + strandat 829.611 kb on + strandat 829.611 kb on + strandat 829.612 kb on - strandat 829.612 kb on - strandat 829.612 kb on - strandat 829.612 kb on - strandat 829.612 kb on - strandat 829.612 kb on - strandat 829.632 kb on - strandat 829.632 kb on - strandat 829.632 kb on - strandat 829.632 kb on - strandat 829.632 kb on - strandat 829.711 kb on + strandat 829.711 kb on + strandat 829.711 kb on + strandat 829.712 kb on - strandat 829.712 kb on - strandat 829.712 kb on - strandat 829.724 kb on + strandat 829.725 kb on - strandat 829.868 kb on + strand, within AO353_03880at 829.868 kb on + strand, within AO353_03880at 829.868 kb on + strand, within AO353_03880at 829.868 kb on + strand, within AO353_03880at 829.869 kb on - strand, within AO353_03880at 829.869 kb on - strand, within AO353_03880at 829.869 kb on - strand, within AO353_03880at 829.869 kb on - strand, within AO353_03880at 829.919 kb on + strand, within AO353_03880at 829.920 kb on - strand, within AO353_03880at 829.920 kb on - strand, within AO353_03880at 829.920 kb on - strand, within AO353_03880at 829.920 kb on - strand, within AO353_03880at 829.972 kb on - strand, within AO353_03880at 829.972 kb on - strand, within AO353_03880at 829.972 kb on - strand, within AO353_03880at 830.152 kb on - strand, within AO353_03880at 830.224 kb on + strand, within AO353_03880at 830.225 kb on - strand, within AO353_03880at 830.225 kb on - strand, within AO353_03880at 830.225 kb on - strand, within AO353_03880at 830.225 kb on - strand, within AO353_03880at 830.324 kb on + strand, within AO353_03880at 830.324 kb on + strand, within AO353_03880at 830.324 kb on + strand, within AO353_03880at 830.324 kb on + strand, within AO353_03880at 830.324 kb on + strand, within AO353_03880at 830.325 kb on - strand, within AO353_03880at 830.325 kb on - strand, within AO353_03880at 830.325 kb on - strand, within AO353_03880at 830.325 kb on - strand, within AO353_03880at 830.325 kb on - strand, within AO353_03880at 830.325 kb on - strand, within AO353_03880at 830.325 kb on - strand, within AO353_03880at 830.325 kb on - strand, within AO353_03880at 830.327 kb on + strand, within AO353_03880at 830.327 kb on + strand, within AO353_03880at 830.328 kb on - strand, within AO353_03880at 830.328 kb on - strand, within AO353_03880at 830.351 kb on + strand, within AO353_03880at 830.351 kb on + strand, within AO353_03880at 830.351 kb on + strand, within AO353_03880at 830.351 kb on + strand, within AO353_03880at 830.351 kb on + strand, within AO353_03880at 830.351 kb on + strand, within AO353_03880at 830.351 kb on + strand, within AO353_03880at 830.351 kb on + strand, within AO353_03880at 830.351 kb on + strand, within AO353_03880at 830.351 kb on + strand, within AO353_03880at 830.352 kb on - strand, within AO353_03880at 830.352 kb on - strand, within AO353_03880at 830.352 kb on - strand, within AO353_03880at 830.352 kb on - strand, within AO353_03880at 830.352 kb on - strand, within AO353_03880at 830.352 kb on - strand, within AO353_03880at 830.352 kb on - strand, within AO353_03880

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 358 mM
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827,888 + +0.5
827,889 - +0.2
827,923 + +0.7
827,923 + +0.5
827,923 + -0.3
827,923 + -0.8
827,923 + -0.3
827,923 + -0.8
827,923 + +1.1
827,924 - -1.0
827,924 - -0.1
827,924 - -0.7
828,068 + AO353_03870 0.16 +1.5
828,353 + AO353_03870 0.49 +0.7
828,353 + AO353_03870 0.49 -0.3
828,353 + AO353_03870 0.49 -0.2
828,353 + AO353_03870 0.49 -0.6
828,354 - AO353_03870 0.49 -1.8
828,354 - AO353_03870 0.49 -0.8
828,354 - AO353_03870 0.49 -0.1
828,354 - AO353_03870 0.49 -0.6
828,354 - AO353_03870 0.49 +0.2
828,354 - AO353_03870 0.49 -1.3
828,354 - AO353_03870 0.49 +1.3
828,586 - AO353_03870 0.75 -2.4
828,716 + AO353_03870 0.90 +0.4
828,716 + AO353_03870 0.90 -0.3
828,719 + -2.4
828,719 + +0.7
828,719 + +0.0
828,720 - +3.3
828,720 - -0.4
828,720 - -0.8
828,832 - +1.5
828,832 - -0.1
828,832 - -1.1
828,872 + +0.6
828,872 + -0.7
828,872 + +0.5
828,872 + -0.2
828,873 - -0.3
828,873 - -0.1
828,885 + +0.0
828,885 + +0.7
828,885 + +1.5
828,911 - +0.2
829,027 + AO353_03875 0.24 +0.7
829,108 - AO353_03875 0.37 +0.1
829,108 - AO353_03875 0.37 -1.0
829,108 - AO353_03875 0.37 -2.3
829,108 - AO353_03875 0.37 -0.8
829,137 + AO353_03875 0.42 -0.4
829,137 + AO353_03875 0.42 -2.4
829,137 + AO353_03875 0.42 -1.3
829,137 + AO353_03875 0.42 -1.0
829,137 + AO353_03875 0.42 -1.3
829,138 - AO353_03875 0.42 -0.3
829,138 - AO353_03875 0.42 +0.7
829,138 - AO353_03875 0.42 -1.0
829,138 - AO353_03875 0.42 +0.0
829,217 + AO353_03875 0.55 +0.7
829,218 - AO353_03875 0.55 -0.1
829,515 + -0.1
829,515 + -0.6
829,515 + -1.5
829,515 + -0.8
829,516 - -1.6
829,516 - -0.3
829,516 - -0.4
829,611 + +0.7
829,611 + -0.8
829,611 + +0.3
829,612 - -0.5
829,612 - +0.7
829,612 - -0.5
829,612 - -1.0
829,612 - -0.1
829,612 - +0.7
829,632 - -0.5
829,632 - +1.0
829,632 - +0.3
829,632 - +0.0
829,632 - -0.8
829,711 + -0.7
829,711 + +0.5
829,711 + +0.0
829,712 - -1.0
829,712 - +0.4
829,712 - -0.5
829,724 + -1.3
829,725 - -1.5
829,868 + AO353_03880 0.16 -0.8
829,868 + AO353_03880 0.16 +0.2
829,868 + AO353_03880 0.16 +1.7
829,868 + AO353_03880 0.16 -0.3
829,869 - AO353_03880 0.16 +1.5
829,869 - AO353_03880 0.16 +2.6
829,869 - AO353_03880 0.16 -0.8
829,869 - AO353_03880 0.16 +1.8
829,919 + AO353_03880 0.22 +1.3
829,920 - AO353_03880 0.22 -1.1
829,920 - AO353_03880 0.22 +0.2
829,920 - AO353_03880 0.22 +0.1
829,920 - AO353_03880 0.22 +0.2
829,972 - AO353_03880 0.28 -0.2
829,972 - AO353_03880 0.28 +0.7
829,972 - AO353_03880 0.28 +0.5
830,152 - AO353_03880 0.48 +0.7
830,224 + AO353_03880 0.57 -1.1
830,225 - AO353_03880 0.57 -0.3
830,225 - AO353_03880 0.57 -1.1
830,225 - AO353_03880 0.57 +0.9
830,225 - AO353_03880 0.57 -0.4
830,324 + AO353_03880 0.68 -1.0
830,324 + AO353_03880 0.68 +0.0
830,324 + AO353_03880 0.68 +0.4
830,324 + AO353_03880 0.68 -0.5
830,324 + AO353_03880 0.68 +0.3
830,325 - AO353_03880 0.68 -0.3
830,325 - AO353_03880 0.68 -1.1
830,325 - AO353_03880 0.68 +0.4
830,325 - AO353_03880 0.68 -0.8
830,325 - AO353_03880 0.68 +0.0
830,325 - AO353_03880 0.68 +0.1
830,325 - AO353_03880 0.68 +0.4
830,325 - AO353_03880 0.68 -0.7
830,327 + AO353_03880 0.68 +0.6
830,327 + AO353_03880 0.68 +1.0
830,328 - AO353_03880 0.68 -0.8
830,328 - AO353_03880 0.68 -0.3
830,351 + AO353_03880 0.71 +0.5
830,351 + AO353_03880 0.71 +1.2
830,351 + AO353_03880 0.71 -2.3
830,351 + AO353_03880 0.71 +0.7
830,351 + AO353_03880 0.71 -1.7
830,351 + AO353_03880 0.71 -1.9
830,351 + AO353_03880 0.71 -0.8
830,351 + AO353_03880 0.71 +0.7
830,351 + AO353_03880 0.71 +0.6
830,351 + AO353_03880 0.71 +0.5
830,352 - AO353_03880 0.71 -1.0
830,352 - AO353_03880 0.71 -0.1
830,352 - AO353_03880 0.71 +0.1
830,352 - AO353_03880 0.71 +0.5
830,352 - AO353_03880 0.71 +0.7
830,352 - AO353_03880 0.71 +0.2
830,352 - AO353_03880 0.71 -0.4

Or see this region's nucleotide sequence