Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03115

Experiment: Choline chloride 358 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03110 and AO353_03115 are separated by 202 nucleotidesAO353_03115 and AO353_03120 are separated by 163 nucleotidesAO353_03120 and AO353_03125 overlap by 16 nucleotides AO353_03110: AO353_03110 - hydrolase, at 666,118 to 667,173 _03110 AO353_03115: AO353_03115 - TetR family transcriptional regulator, at 667,376 to 667,990 _03115 AO353_03120: AO353_03120 - hypothetical protein, at 668,154 to 668,693 _03120 AO353_03125: AO353_03125 - LysR family transcriptional regulator, at 668,678 to 669,577 _03125 Position (kb) 667 668Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 666.404 kb on + strand, within AO353_03110at 666.405 kb on - strand, within AO353_03110at 666.405 kb on - strand, within AO353_03110at 666.477 kb on - strand, within AO353_03110at 666.762 kb on - strand, within AO353_03110at 666.943 kb on + strand, within AO353_03110at 666.943 kb on + strand, within AO353_03110at 666.943 kb on + strand, within AO353_03110at 666.943 kb on + strand, within AO353_03110at 666.944 kb on - strand, within AO353_03110at 666.944 kb on - strand, within AO353_03110at 666.944 kb on - strand, within AO353_03110at 666.944 kb on - strand, within AO353_03110at 666.944 kb on - strand, within AO353_03110at 666.999 kb on + strand, within AO353_03110at 666.999 kb on + strand, within AO353_03110at 667.000 kb on - strand, within AO353_03110at 667.000 kb on - strand, within AO353_03110at 667.020 kb on + strand, within AO353_03110at 667.104 kb on - strandat 667.104 kb on - strandat 667.147 kb on - strandat 667.157 kb on + strandat 667.157 kb on + strandat 667.158 kb on - strandat 667.177 kb on + strandat 667.177 kb on + strandat 667.177 kb on + strandat 667.177 kb on + strandat 667.177 kb on + strandat 667.177 kb on + strandat 667.177 kb on + strandat 667.177 kb on + strandat 667.178 kb on - strandat 667.178 kb on - strandat 667.178 kb on - strandat 667.178 kb on - strandat 667.228 kb on - strandat 667.264 kb on + strandat 667.283 kb on + strandat 667.283 kb on + strandat 667.283 kb on + strandat 667.297 kb on + strandat 667.298 kb on - strandat 667.344 kb on + strandat 667.345 kb on - strandat 667.345 kb on - strandat 667.371 kb on + strandat 667.372 kb on - strandat 667.375 kb on + strandat 667.375 kb on + strandat 667.375 kb on + strandat 667.375 kb on + strandat 667.375 kb on + strandat 667.375 kb on + strandat 667.376 kb on - strandat 667.376 kb on - strandat 667.376 kb on - strandat 667.376 kb on - strandat 667.376 kb on - strandat 667.406 kb on - strandat 667.517 kb on + strand, within AO353_03115at 667.517 kb on + strand, within AO353_03115at 667.518 kb on - strand, within AO353_03115at 667.518 kb on - strand, within AO353_03115at 667.518 kb on - strand, within AO353_03115at 667.827 kb on + strand, within AO353_03115at 667.828 kb on - strand, within AO353_03115at 667.828 kb on - strand, within AO353_03115at 667.941 kb on + strandat 667.941 kb on + strandat 667.941 kb on + strandat 667.941 kb on + strandat 667.942 kb on - strandat 667.942 kb on - strandat 667.942 kb on - strandat 667.942 kb on - strandat 667.942 kb on - strandat 667.973 kb on + strandat 667.973 kb on + strandat 667.974 kb on - strandat 667.974 kb on - strandat 667.974 kb on - strandat 668.026 kb on + strandat 668.026 kb on + strandat 668.026 kb on + strandat 668.027 kb on - strandat 668.027 kb on - strandat 668.039 kb on - strandat 668.062 kb on + strandat 668.062 kb on + strandat 668.062 kb on + strandat 668.062 kb on + strandat 668.070 kb on + strandat 668.071 kb on - strandat 668.115 kb on + strandat 668.115 kb on + strandat 668.116 kb on - strandat 668.116 kb on - strandat 668.116 kb on - strandat 668.117 kb on + strandat 668.117 kb on + strandat 668.117 kb on + strandat 668.117 kb on + strandat 668.117 kb on + strandat 668.117 kb on + strandat 668.117 kb on + strandat 668.117 kb on + strandat 668.118 kb on - strandat 668.118 kb on - strandat 668.118 kb on - strandat 668.118 kb on - strandat 668.118 kb on - strandat 668.118 kb on - strandat 668.118 kb on - strandat 668.118 kb on - strandat 668.118 kb on - strandat 668.118 kb on - strandat 668.118 kb on - strandat 668.118 kb on - strandat 668.118 kb on - strandat 668.118 kb on - strandat 668.427 kb on + strand, within AO353_03120at 668.427 kb on + strand, within AO353_03120at 668.427 kb on + strand, within AO353_03120at 668.428 kb on - strand, within AO353_03120at 668.503 kb on + strand, within AO353_03120at 668.504 kb on - strand, within AO353_03120at 668.504 kb on - strand, within AO353_03120at 668.572 kb on + strand, within AO353_03120at 668.572 kb on + strand, within AO353_03120at 668.572 kb on + strand, within AO353_03120at 668.572 kb on + strand, within AO353_03120at 668.573 kb on - strand, within AO353_03120at 668.717 kb on + strandat 668.718 kb on - strandat 668.718 kb on - strandat 668.718 kb on - strandat 668.794 kb on - strand, within AO353_03125at 668.883 kb on - strand, within AO353_03125at 668.911 kb on + strand, within AO353_03125at 668.911 kb on + strand, within AO353_03125at 668.911 kb on + strand, within AO353_03125at 668.912 kb on - strand, within AO353_03125at 668.912 kb on - strand, within AO353_03125

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 358 mM
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666,404 + AO353_03110 0.27 +0.5
666,405 - AO353_03110 0.27 -0.3
666,405 - AO353_03110 0.27 +0.7
666,477 - AO353_03110 0.34 +0.2
666,762 - AO353_03110 0.61 -2.8
666,943 + AO353_03110 0.78 +1.2
666,943 + AO353_03110 0.78 -0.0
666,943 + AO353_03110 0.78 -1.9
666,943 + AO353_03110 0.78 +0.1
666,944 - AO353_03110 0.78 +0.2
666,944 - AO353_03110 0.78 -0.8
666,944 - AO353_03110 0.78 +0.4
666,944 - AO353_03110 0.78 +0.6
666,944 - AO353_03110 0.78 -1.5
666,999 + AO353_03110 0.83 +0.4
666,999 + AO353_03110 0.83 +1.1
667,000 - AO353_03110 0.84 -1.6
667,000 - AO353_03110 0.84 -0.3
667,020 + AO353_03110 0.85 -0.9
667,104 - -0.7
667,104 - -1.6
667,147 - +1.0
667,157 + -0.5
667,157 + -0.7
667,158 - -0.4
667,177 + -1.4
667,177 + +0.1
667,177 + +0.7
667,177 + +1.1
667,177 + +0.7
667,177 + -0.0
667,177 + -0.4
667,177 + -0.0
667,178 - +0.2
667,178 - -1.2
667,178 - +2.1
667,178 - +3.5
667,228 - +0.1
667,264 + +0.2
667,283 + -0.3
667,283 + -0.7
667,283 + +1.0
667,297 + +0.7
667,298 - -0.9
667,344 + -0.9
667,345 - -0.9
667,345 - -0.6
667,371 + -1.3
667,372 - +0.7
667,375 + +0.7
667,375 + +1.7
667,375 + -1.3
667,375 + -0.9
667,375 + -0.9
667,375 + +1.3
667,376 - +2.3
667,376 - -0.3
667,376 - -0.7
667,376 - +2.4
667,376 - -0.3
667,406 - -0.5
667,517 + AO353_03115 0.23 -0.5
667,517 + AO353_03115 0.23 +0.0
667,518 - AO353_03115 0.23 -0.5
667,518 - AO353_03115 0.23 -0.3
667,518 - AO353_03115 0.23 -1.3
667,827 + AO353_03115 0.73 -0.3
667,828 - AO353_03115 0.73 -1.9
667,828 - AO353_03115 0.73 -1.3
667,941 + +0.7
667,941 + -0.6
667,941 + +0.1
667,941 + +0.9
667,942 - +1.3
667,942 - +1.1
667,942 - -1.6
667,942 - +3.0
667,942 - -0.2
667,973 + -1.3
667,973 + -0.8
667,974 - +0.7
667,974 - -0.9
667,974 - +2.3
668,026 + +1.9
668,026 + +0.7
668,026 + +0.7
668,027 - -3.5
668,027 - -0.7
668,039 - +2.1
668,062 + +0.4
668,062 + -0.0
668,062 + +0.7
668,062 + -0.9
668,070 + +0.6
668,071 - -0.3
668,115 + +0.1
668,115 + +0.2
668,116 - +0.6
668,116 - +0.3
668,116 - +0.1
668,117 + +0.8
668,117 + +0.9
668,117 + +1.0
668,117 + +0.3
668,117 + -0.7
668,117 + +0.7
668,117 + +2.7
668,117 + -1.3
668,118 - -1.3
668,118 - -1.6
668,118 - +0.2
668,118 - -1.6
668,118 - -0.6
668,118 - +0.7
668,118 - -0.3
668,118 - +2.4
668,118 - +1.1
668,118 - -0.1
668,118 - -1.7
668,118 - +0.4
668,118 - +1.7
668,118 - -0.2
668,427 + AO353_03120 0.51 +1.1
668,427 + AO353_03120 0.51 -0.2
668,427 + AO353_03120 0.51 +0.0
668,428 - AO353_03120 0.51 -0.9
668,503 + AO353_03120 0.65 -0.6
668,504 - AO353_03120 0.65 +1.6
668,504 - AO353_03120 0.65 -0.9
668,572 + AO353_03120 0.77 +0.3
668,572 + AO353_03120 0.77 -0.0
668,572 + AO353_03120 0.77 +1.4
668,572 + AO353_03120 0.77 +2.3
668,573 - AO353_03120 0.78 -1.5
668,717 + +0.9
668,718 - -1.6
668,718 - -0.6
668,718 - +0.7
668,794 - AO353_03125 0.13 -0.1
668,883 - AO353_03125 0.23 +0.7
668,911 + AO353_03125 0.26 -0.3
668,911 + AO353_03125 0.26 +0.4
668,911 + AO353_03125 0.26 +0.2
668,912 - AO353_03125 0.26 +0.6
668,912 - AO353_03125 0.26 +0.0

Or see this region's nucleotide sequence